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OR_07232018_dam_0_1um_scaffold_318

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_318_1
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..148)
DNA (147bp) protein (49aa)
aceF; dihydrolipoamide acetyltransferase AceF (EC:2.3.1.12)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
dihydrolipoamide acetyltransferase n=1 Tax=Caldimonas manganoxidans RepID=UPI00037EF48D
OR_07232018_dam_0_1um_scaffold_318_2
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(187..2907)
DNA (2721bp) protein (907aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
aceE; Pyruvate dehydrogenase E1 component (EC:1.2.4.1)
Pyruvate dehydrogenase E1 component n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVH7_THIA3
OR_07232018_dam_0_1um_scaffold_318_3
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3104..5620
DNA (2517bp) protein (839aa)
Signal transduction histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CAZ89297.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Signal transduction histidine kinase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVH8_THIA3
OR_07232018_dam_0_1um_scaffold_318_4
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5636..6250
DNA (615bp) protein (205aa)
Two component transcriptional regulator, LuxR family n=2 Tax=Thiomonas RepID=D5X471_THIK1
LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ADG31658.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_318_5
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6328..7188
DNA (861bp) protein (287aa)
methylenetetrahydrofolate dehydrogenase (EC:1.5.1.5)
Bifunctional protein FolD n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X472_THIK1
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
OR_07232018_dam_0_1um_scaffold_318_6
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7223..9286
DNA (2064bp) protein (688aa)
oligopeptidase A (EC:3.4.24.70)
Oligopeptidase A {ECO:0000313|EMBL:ADG31660.1}; EC=3.4.24.70 {ECO:0000313|EMBL:ADG31660.1};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Oligopeptidase A n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X473_THIK1
OR_07232018_dam_0_1um_scaffold_318_7
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9369..10043
DNA (675bp) protein (225aa)
Putative glutaredoxin/Thioredoxin n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVI2_THIA3
putative glutaredoxin/Thioredoxin
Putative glutaredoxin/Thioredoxin {ECO:0000313|EMBL:CAZ89301.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_318_8
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10069..10731)
DNA (663bp) protein (221aa)
rpiA; Ribose-5-phosphate isomerase A (Phosphoriboisomerase A) (PRI) (EC:5.3.1.6)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Ribose-5-phosphate isomerase A n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVI3_THIA3
OR_07232018_dam_0_1um_scaffold_318_9
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10806..11864
DNA (1059bp) protein (353aa)
pyrD; Dihydroorotate dehydrogenase (Dihydroorotate oxidase) (DHOdehase) (DHODase) (DHOD) (EC:1.3.98.1)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVI4_THIA3
OR_07232018_dam_0_1um_scaffold_318_10
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11928..12086)
DNA (159bp) protein (53aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4K0_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31664.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_318_11
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12322..13728)
DNA (1407bp) protein (469aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Glutamate--tRNA ligase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4K1_THIK1
glutamyl-tRNA synthetase
OR_07232018_dam_0_1um_scaffold_318_12
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13779..14990)
DNA (1212bp) protein (404aa)
O-succinylhomoserine sulfhydrylase (EC:2.5.1.48)
O-acylhomoserine sulfhydrylase {ECO:0000313|EMBL:CDW93129.1}; EC=2.5.1.- {ECO:0000313|EMBL:CDW93129.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
O-succinylhomoserine sulfhydrylase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4K2_THIK1
OR_07232018_dam_0_1um_scaffold_318_13
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14987..16492)
DNA (1506bp) protein (502aa)
purF; Amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) (EC:2.4.2.14)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Amidophosphoribosyltransferase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVI7_THIA3
OR_07232018_dam_0_1um_scaffold_318_14
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16530..17021)
DNA (492bp) protein (164aa)
Colicin V production protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4K4_THIK1
colicin V production protein
Colicin V production protein {ECO:0000313|EMBL:ADG31668.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_318_15
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17018..17896)
DNA (879bp) protein (293aa)
Sporulation domain protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4K5_THIK1
Sporulation domain protein {ECO:0000313|EMBL:CDW93132.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
sporulation domain-containing protein
OR_07232018_dam_0_1um_scaffold_318_16
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17893..19218)
DNA (1326bp) protein (442aa)
Bifunctional folylpolyglutamate synthase and dihydrofolate synthase {ECO:0000313|EMBL:CDW93133.1}; EC=6.3.2.12 {ECO:0000313|EMBL:CDW93133.1};; EC=6.3.2.17 {ECO:0000313|EMBL:CDW93133.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
folC; FolC bifunctional protein [Includes: Folylpolyglutamate synthase (Folylpoly-gamma-glutamate synthetase) (FPGS) (Tetrahydrofolate synthase) (Tetrahydrofolylpolyglutamate synthase); Dihydrofolate synthase ] (EC:6.3.2.12 6.3.2.17)
FolC bifunctional protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVJ0_THIA3
OR_07232018_dam_0_1um_scaffold_318_17
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19268..20143)
DNA (876bp) protein (292aa)
accD; Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (ACCase beta chain) (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVJ1_THIA3
OR_07232018_dam_0_1um_scaffold_318_18
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20156..20914)
DNA (759bp) protein (253aa)
tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|RuleBase:RU000601};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Tryptophan synthase alpha chain n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X4K8_THIK1
Displaying 18 items

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