ggKbase home page

OR_07232018_dam_0_1um_scaffold_348

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_348_1
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1354
DNA (1353bp) protein (451aa)
Glycosyl transferase family 39 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1V9_THIK1
Glycosyl transferase family 39 {ECO:0000313|EMBL:CDW96010.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
glycosyl transferase
OR_07232018_dam_0_1um_scaffold_348_2
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1351..1722
DNA (372bp) protein (124aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1W0_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31106.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_348_3
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1733..2869
DNA (1137bp) protein (379aa)
Putative DegT/DnrJ/EryC1/StrS aminotransferase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CU42_THIA3
putative DegT/DnrJ/EryC1/StrS aminotransferase
Putative DegT/DnrJ/EryC1/StrS aminotransferase {ECO:0000313|EMBL:CAZ88811.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_348_4
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2866..3888
DNA (1023bp) protein (341aa)
Glycosyl transferase family 2 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1W2_THIK1
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:ADG31108.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_348_5
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3885..4814
DNA (930bp) protein (310aa)
putative Methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase {ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|SAAS:SAAS00150580, ECO:0000313|EMBL:CAZ88813.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Putative Methionyl-tRNA formyltransferase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CU44_THIA3
OR_07232018_dam_0_1um_scaffold_348_6

Not on your lists

4811..5866
DNA (1056bp) protein (352aa)
Fused UDP-L-Ara4N formyltransferase UDP-GlcA C-4'-decarboxylase {ECO:0000313|EMBL:CBH98115.1}; EC=4.1.1.35 {ECO:0000313|EMBL:CBH98115.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative NAD-dependent epimerase/dehydratase,yfbG, arnA, pmrI, SAF (EC:4.1.1.35 4.2.1.46)
Fused UDP-L-Ara4N formyltransferase UDP-GlcA C-4'-decarboxylase n=1 Tax=mine drainage metagenome RepID=E6PT58_9ZZZZ
OR_07232018_dam_0_1um_scaffold_348_7
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6210..6539
DNA (330bp) protein (110aa)
Thioredoxin n=2 Tax=Thiomonas RepID=D5X1W5_THIK1
thioredoxin
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_348_8
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6717..8024
DNA (1308bp) protein (436aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Transcription termination factor Rho n=2 Tax=Thiomonas RepID=D5X1W6_THIK1
rho; Transcription termination factor rho (ATP-dependent helicase rho)
OR_07232018_dam_0_1um_scaffold_348_9
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8178..8438
DNA (261bp) protein (87aa)
50S ribosomal protein L31 n=2 Tax=Thiomonas RepID=D5X1W7_THIK1
50S ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|RuleBase:RU000564}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_348_10
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8556..10253
DNA (1698bp) protein (566aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1W8_THIK1
Uncharacterized protein {ECO:0000313|EMBL:CDW96023.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_348_11
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10266..11618
DNA (1353bp) protein (451aa)
MATE efflux family protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1W9_THIK1
MATE efflux family protein
Putative Multi antimicrobial extrusion protein MatE {ECO:0000313|EMBL:CDW96024.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
OR_07232018_dam_0_1um_scaffold_348_12
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11711..12103)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CU51_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ88820.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_348_13
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12313..14244)
DNA (1932bp) protein (644aa)
ABC transporter related protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1X1_THIK1
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADG31117.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_348_14
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14241..15191)
DNA (951bp) protein (317aa)
Protein-(Glutamine-N5) methyltransferase, ribosomal protein L3-specific n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1X2_THIK1
protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific
Protein-(Glutamine-N5) methyltransferase, ribosomal protein L3-specific {ECO:0000313|EMBL:ADG31118.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_348_15
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15188..16336)
DNA (1149bp) protein (383aa)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
dapE; Succinyl-diaminopimelate desuccinylase (SDAP) (EC:3.5.1.18)
Succinyl-diaminopimelate desuccinylase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CU55_THIA3
OR_07232018_dam_0_1um_scaffold_348_16
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16356..17507)
DNA (1152bp) protein (384aa)
Twitching motility protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1X4_THIK1
twitching motility protein
Twitching motility protein {ECO:0000313|EMBL:ADG31120.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_348_17
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17556..18377)
DNA (822bp) protein (274aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013419}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811, ECO:0000256|SAAS:SAAS00013404};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=2 Tax=Thiomonas RepID=D5X1X5_THIK1
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
OR_07232018_dam_0_1um_scaffold_348_18
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18386..19519)
DNA (1134bp) protein (378aa)
Succinyldiaminopimelate transaminase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1X6_THIK1
succinyldiaminopimelate transaminase
Succinyldiaminopimelate transaminase {ECO:0000313|EMBL:ADG31122.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_348_19
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19735..20325
DNA (591bp) protein (197aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1X7_THIK1
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADG31123.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_348_20
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20429..20773
DNA (345bp) protein (115aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1X8_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31124.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_348_21
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20757..21026
DNA (270bp) protein (90aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1X9_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31125.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_348_22
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21053..22003)
DNA (951bp) protein (317aa)
Muramoyltetrapeptide carboxypeptidase (EC:3.4.17.13)
Muramoyltetrapeptide carboxypeptidase {ECO:0000313|EMBL:ADG31126.1}; EC=3.4.17.13 {ECO:0000313|EMBL:ADG31126.1};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Muramoyltetrapeptide carboxypeptidase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1Y0_THIK1
OR_07232018_dam_0_1um_scaffold_348_23
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22041..22604)
DNA (564bp) protein (188aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
CMP/dCMP deaminase zinc-binding protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1Y1_THIK1
CMP/dCMP deaminase zinc-binding protein
OR_07232018_dam_0_1um_scaffold_348_24
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22607..22825)
DNA (219bp) protein (73aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1Y2_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31128.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_348_25

Not on your lists

comp(22832..23509)
DNA (678bp) protein (226aa)
GMP synthase (Glutamine-hydrolyzing) (Glutamine amidotransferase) (GMP synthetase) (GMPS) {ECO:0000313|EMBL:CBH97704.1}; EC=6.3.5.2 {ECO:0000313|EMBL:CBH97704.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
guaA; GMP synthase (EC:6.3.5.2)
GMP synthase (Glutamine-hydrolyzing) (Glutamine amidotransferase) (GMP synthetase) (GMPS) n=1 Tax=mine drainage metagenome RepID=E6PRZ8_9ZZZZ
Displaying 25 items

View Taxonomy