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OR_07232018_dam_0_1um_scaffold_443

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_443_1
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..257)
DNA (255bp) protein (85aa)
Putative porin n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLY5_THIA3
Putative porin {ECO:0000313|EMBL:CDW94223.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative porin
OR_07232018_dam_0_1um_scaffold_443_2
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(673..2178)
DNA (1506bp) protein (502aa)
Ribonuclease G {ECO:0000313|EMBL:CDW94224.1}; EC=3.1.4.- {ECO:0000313|EMBL:CDW94224.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Ribonuclease, Rne/Rng family n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5K6_THIK1
Rne/Rng family ribonuclease
OR_07232018_dam_0_1um_scaffold_443_3
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2175..2852)
DNA (678bp) protein (226aa)
Maf-like protein Tint_2557 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5K5_THIK1
maf protein
Maf-like protein Tint_2557 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_443_4

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2958..4352
DNA (1395bp) protein (465aa)
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (Murein peptide ligase) {ECO:0000313|EMBL:CBH95663.1}; EC=6.3.2.- {ECO:0000313|EMBL:CBH95663.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (Murein peptide ligase) n=1 Tax=mine drainage metagenome RepID=E6PL62_9ZZZZ
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
OR_07232018_dam_0_1um_scaffold_443_5
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4363..5460
DNA (1098bp) protein (366aa)
chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Chorismate synthase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5K3_THIK1
OR_07232018_dam_0_1um_scaffold_443_trna_1
unknown

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comp(5462..5541)
DNA (80bp)
transferRNA Arg
OR_07232018_dam_0_1um_scaffold_443_6
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5575..6441)
DNA (867bp) protein (289aa)
Putative 1-acylglycerol-3-phosphate O-acyltransferase {ECO:0000313|EMBL:CDW94229.1}; EC=2.3.1.51 {ECO:0000313|EMBL:CDW94229.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative 1-acylglycerol-3-phosphate O-acyltransferase (EC:2.3.1.51)
Putative 1-acylglycerol-3-phosphate O-acyltransferase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLX8_THIA3
OR_07232018_dam_0_1um_scaffold_443_7
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6438..7742)
DNA (1305bp) protein (435aa)
putative Dihydroorotase-like protein (Aspartate carbamoyltransferase 44 kDa Non-catalytic chain) PyrC' (EC:3.5.2.3)
Putative Dihydroorotase-like protein (Aspartate carbamoyltransferase 44 kDa Non-catalytic chain) PyrC n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLX7_THIA3
Dihydroorotase-like protein {ECO:0000313|EMBL:CDW94230.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
OR_07232018_dam_0_1um_scaffold_443_8
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7739..8707)
DNA (969bp) protein (323aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Aspartate carbamoyltransferase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5J6_THIK1
aspartate carbamoyltransferase
OR_07232018_dam_0_1um_scaffold_443_9
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8714..9253)
DNA (540bp) protein (180aa)
putative Pyrimidine operon attenuation protein PyrR/uracil phosphoribosyltransferase (EC:2.4.2.9)
Putative Pyrimidine operon attenuation protein PyrR/uracil phosphoribosyltransferase {ECO:0000313|EMBL:CAZ89553.1}; EC=2.4.2.9 {ECO:0000313|EMBL:CAZ89553.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Putative Pyrimidine operon attenuation protein PyrR/uracil phosphoribosyltransferase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLX5_THIA3
OR_07232018_dam_0_1um_scaffold_443_10
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9257..9643)
DNA (387bp) protein (129aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Putative Holliday junction resolvase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLX4_THIA3
putative holliday junction resolvase
OR_07232018_dam_0_1um_scaffold_443_11
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9636..10049)
DNA (414bp) protein (138aa)
UPF0301 protein Tint_2545 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5J3_THIK1
hypothetical protein
UPF0301 protein Tint_2545 {ECO:0000256|HAMAP-Rule:MF_00758}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_443_12
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10279..11784
DNA (1506bp) protein (502aa)
DNA photolyase FAD-binding protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5J2_THIK1
DNA photolyase FAD-binding protein
DNA photolyase FAD-binding protein {ECO:0000313|EMBL:ADG31885.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_443_13
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11821..17526)
DNA (5706bp) protein (1902aa)
CheA signal transduction histidine kinase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5J1_THIK1
CheA signal transduction histidine kinase {ECO:0000313|EMBL:ADG31884.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
CheA signal transduction histidine kinase
OR_07232018_dam_0_1um_scaffold_443_14
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17576..19786)
DNA (2211bp) protein (737aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5J0_THIK1
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ADG31883.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
methyl-accepting chemotaxis sensory transducer
OR_07232018_dam_0_1um_scaffold_443_15
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19894..20418)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLW9_THIA3
putative Protein pilI
Uncharacterized protein {ECO:0000313|EMBL:CAZ89547.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_443_16
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20475..20840)
DNA (366bp) protein (122aa)
Response regulator receiver protein n=2 Tax=Thiomonas RepID=D5X5I8_THIK1
pilH; Protein pilH
Twitching motility protein {ECO:0000313|EMBL:CDW94241.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
OR_07232018_dam_0_1um_scaffold_443_17
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20863..21261)
DNA (399bp) protein (133aa)
Response regulator receiver protein n=2 Tax=Thiomonas RepID=D5X5I7_THIK1
pilG; Protein pilG
Response regulator receiver protein {ECO:0000313|EMBL:ADG31880.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_443_18
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21612..22505
DNA (894bp) protein (298aa)
putative phosphomethylpyrimidine kinase (EC:2.7.4.7)
Putative phosphomethylpyrimidine kinase {ECO:0000313|EMBL:CDW94245.1}; EC=2.7.4.7 {ECO:0000313|EMBL:CDW94245.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Phosphomethylpyrimidine kinase type-1 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5I5_THIK1
OR_07232018_dam_0_1um_scaffold_443_19
unknown

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22502..22594
DNA (93bp) protein (31aa)

This feature has no annotations

OR_07232018_dam_0_1um_scaffold_443_20
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22603..23892
DNA (1290bp) protein (430aa)
hemL; Glutamate-1-semialdehyde 2,1-aminomutase (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLW4_THIA3
OR_07232018_dam_0_1um_scaffold_443_21
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23933..24625)
DNA (693bp) protein (231aa)
putative monofunctional biosynthetic peptidoglycan transglycosylase MtgA (EC:2.4.2.-)
Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055699};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLW3_THIA3
OR_07232018_dam_0_1um_scaffold_443_22
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(24652..25509)
DNA (858bp) protein (286aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Shikimate dehydrogenase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5I2_THIK1
shikimate 5-dehydrogenase
OR_07232018_dam_0_1um_scaffold_443_23
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25527..26411)
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLW1_THIA3
TonB family protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ89539.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_443_24
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26441..28501)
DNA (2061bp) protein (687aa)
Putative exoribonuclease II {ECO:0000313|EMBL:CAZ89538.1}; EC=3.1.13.1 {ECO:0000313|EMBL:CAZ89538.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
putative exoribonuclease II (EC:3.1.13.1)
Putative exoribonuclease II n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLW0_THIA3
OR_07232018_dam_0_1um_scaffold_443_25
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28810..29550)
DNA (741bp) protein (247aa)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5H9_THIK1
3-oxoacyl-(acyl-carrier-protein) reductase
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:ADG31872.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_443_26
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29577..30212)
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5H8_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31871.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_443_27
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30276..30767)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLV7_THIA3
CBS domain containing protein {ECO:0000313|EMBL:CDW94255.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
conserved hypothetical protein; putative CBS domain
OR_07232018_dam_0_1um_scaffold_443_28
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30884..31657
DNA (774bp) protein (258aa)
Alpha/beta hydrolase fold protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5H6_THIK1
alpha/beta fold family hydrolase
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ADG31869.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_443_29
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31597..31953)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLV5_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ89533.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Displaying items 1-30 of 32 in total

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