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OR_07232018_dam_0_1um_scaffold_454

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_454_1
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..903
DNA (903bp) protein (301aa)
Abortive infection protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1B8_THIK1
abortive infection protein
Abortive infection protein {ECO:0000313|EMBL:ADG30914.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_454_2
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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903..1412
DNA (510bp) protein (170aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X1B7_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG30913.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_454_3
unknown

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1562..1957
DNA (396bp) protein (132aa)

This feature has no annotations

OR_07232018_dam_0_1um_scaffold_454_4
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2282..4222
DNA (1941bp) protein (647aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Putative Nitrate/nitrite sensor protein narQ n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLP7_THIA3
putative Nitrate/nitrite sensor protein narQ
OR_07232018_dam_0_1um_scaffold_454_5
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4212..4895
DNA (684bp) protein (228aa)
Two component transcriptional regulator, LuxR family n=2 Tax=Thiomonas RepID=D5X5C7_THIK1
putative Nitrate/nitrite response regulator protein narL
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ADG31820.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_454_6
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4954..5358
DNA (405bp) protein (135aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5C8_THIK1
Uncharacterized protein {ECO:0000313|EMBL:CDW94465.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_454_7
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5607..6923
DNA (1317bp) protein (439aa)
Putative Nitrite extrusion protein (Nitrite facilitator) NarK n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLQ0_THIA3
Putative Nitrite extrusion protein (Nitrite facilitator) NarK {ECO:0000313|EMBL:CDW94463.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative Nitrite extrusion protein (Nitrite facilitator) NarK
OR_07232018_dam_0_1um_scaffold_454_8
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6942..8327
DNA (1386bp) protein (462aa)
Nitrate/nitrite transporter n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLQ1_THIA3
narK; nitrate/nitrite transporter
Nitrate/nitrite transporter {ECO:0000313|EMBL:CAZ89479.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_454_9
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8352..12161
DNA (3810bp) protein (1270aa)
Nitrate reductase, alpha subunit n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5C9_THIK1
nitrate reductase subunit alpha
Nitrate reductase, alpha subunit {ECO:0000313|EMBL:ADG31822.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_454_10
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12186..13709
DNA (1524bp) protein (508aa)
Nitrate reductase, beta subunit n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5D0_THIK1
Nitrate reductase, beta subunit {ECO:0000313|EMBL:ADG31823.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
nitrate reductase subunit beta
OR_07232018_dam_0_1um_scaffold_454_11
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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13712..14467
DNA (756bp) protein (252aa)
narW; Respiratory nitrate reductase 2 delta chain (EC:1.7.99.4)
Respiratory nitrate reductase 2 delta chain {ECO:0000313|EMBL:CAZ89482.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CAZ89482.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Respiratory nitrate reductase 2 delta chain n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CLQ4_THIA3
OR_07232018_dam_0_1um_scaffold_454_12
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14472..15158
DNA (687bp) protein (229aa)
Nitrate reductase 1, gamma (Cytochrome b(NR)) subunit {ECO:0000313|EMBL:CDW94458.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CDW94458.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
respiratory nitrate reductase subunit gamma (EC:1.7.99.4)
Respiratory nitrate reductase, gamma subunit n=2 Tax=Thiomonas RepID=D5X5D2_THIK1
OR_07232018_dam_0_1um_scaffold_454_13
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15176..15850
DNA (675bp) protein (225aa)
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5D3_THIK1
PpiC-type peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:CDW94457.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
PpiC-type peptidyl-prolyl cis-trans isomerase
OR_07232018_dam_0_1um_scaffold_454_14
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15879..17114
DNA (1236bp) protein (412aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Carbonic anhydrase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYX4_9BURK
carbonate dehydratase
OR_07232018_dam_0_1um_scaffold_454_15
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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17114..17665
DNA (552bp) protein (184aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X5D5_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31828.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_454_16

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comp(17589..17828)
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000374FFA9
Oxidoreductase Tas, aldo/keto reductase family {ECO:0000313|EMBL:EFK95823.1}; TaxID=749907 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
aldo/keto reductase
OR_07232018_dam_0_1um_scaffold_454_17
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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18176..18898
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQT4_THIA3
Conserved hypothetical protein; putative cAMP-binding domain
Uncharacterized protein {ECO:0000313|EMBL:CAZ86975.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_454_18

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19097..19837
DNA (741bp) protein (247aa)
Cyclic nucleotide-binding domain (CNMP-BD) protein n=1 Tax=mine drainage metagenome RepID=E6PKB7_9ZZZZ
Cyclic nucleotide-binding domain (CNMP-BD) protein {ECO:0000313|EMBL:CBH95368.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative Bacterial regulatory protein, Crp
OR_07232018_dam_0_1um_scaffold_454_19
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20002..20220
DNA (219bp) protein (73aa)
Putative CsbD protein, yjbJ n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQT2_THIA3
putative CsbD protein, yjbJ
Putative CsbD protein, yjbJ {ECO:0000313|EMBL:CAZ86973.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_454_20
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20310..20468
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQT1_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ86972.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_454_21
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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20527..20874
DNA (348bp) protein (116aa)
Putative Transport-associated protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQT0_THIA3
Putative Transport-associated protein {ECO:0000313|EMBL:CDW92916.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative Transport-associated protein
OR_07232018_dam_0_1um_scaffold_454_22
unknown

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comp(20850..20948)
DNA (99bp) protein (33aa)

This feature has no annotations

OR_07232018_dam_0_1um_scaffold_454_23
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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21026..21574
DNA (549bp) protein (183aa)
Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47EA0_DECAR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP49234.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
OR_07232018_dam_0_1um_scaffold_454_24
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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21638..21853
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQS9_THIA3
hypothetical protein
Osmotically-inducible lipoprotein B {ECO:0000313|EMBL:CDW92917.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
OR_07232018_dam_0_1um_scaffold_454_25

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21995..22189
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PJR6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBH95163.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_454_26
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(22258..23631)
DNA (1374bp) protein (458aa)
sodium:proton antiporter n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034B415A
Sodium/hydrogen exchanger {ECO:0000313|EMBL:EED65929.1}; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
Sodium/hydrogen exchanger
OR_07232018_dam_0_1um_scaffold_454_27
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(23844..24275)
DNA (432bp) protein (144aa)
Putative universal stress protein family UspA n=1 Tax=mine drainage metagenome RepID=E6PJQ9_9ZZZZ
Putative universal stress protein family UspA {ECO:0000313|EMBL:CDW92919.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
UspA domain-containing protein
OR_07232018_dam_0_1um_scaffold_454_28
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(24355..24783)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQS7_THIA3
Uncharacterized protein {ECO:0000313|EMBL:CDW92920.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_454_29

Not on your lists

25217..26257
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PJQ3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBH95154.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
diguanylate cyclase/phosphodiesterase
OR_07232018_dam_0_1um_scaffold_454_30
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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26347..26502
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CQS6_THIA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDW92921.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Displaying items 1-30 of 31 in total

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