ggKbase home page

OR_07232018_dam_0_1um_scaffold_619

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_619_1

Not on your lists

2..241
DNA (240bp) protein (80aa)
Putative Permease of the major facilitator superfamily n=1 Tax=mine drainage metagenome RepID=E6PM59_9ZZZZ
Putative Permease of the major facilitator superfamily {ECO:0000313|EMBL:CBH96011.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative Permease of the major facilitator superfamily
OR_07232018_dam_0_1um_scaffold_619_2

Not on your lists

305..1441
DNA (1137bp) protein (379aa)
Putative transporter n=1 Tax=mine drainage metagenome RepID=E6PM60_9ZZZZ
Putative transporter {ECO:0000313|EMBL:CBH96012.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_619_3

Not on your lists

1446..2021
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PM61_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CBH96013.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
conserved hypothetical protein; putative exported protein
OR_07232018_dam_0_1um_scaffold_619_4

Not on your lists

1960..2556
DNA (597bp) protein (199aa)
Thioredoxin family protein n=1 Tax=mine drainage metagenome RepID=E6PM62_9ZZZZ
Thioredoxin family protein {ECO:0000313|EMBL:CBH96014.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
thioredoxin family protein
OR_07232018_dam_0_1um_scaffold_619_5
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2597..2815)
DNA (219bp) protein (73aa)
Blue (Type 1) copper domain protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6L8_THIK1
blue (type 1) copper domain-containing protein
Blue (Type 1) copper domain protein {ECO:0000313|EMBL:ADG30145.1}; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_619_6
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2858..4063
DNA (1206bp) protein (402aa)
Chromate transporter, chromate ion transporter (CHR) family n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6L7_THIK1
chromate ion transporter family chromate transporter
Chromate transporter, chromate ion transporter (CHR) family {ECO:0000313|EMBL:ADG30144.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_619_7
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4180..4809
DNA (630bp) protein (210aa)
Putative transcriptional regulator n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CSF6_THIA3
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:CAZ87684.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_619_8
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4869..5804)
DNA (936bp) protein (312aa)
Transcriptional regulator, LysR family n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z175_9NEIS
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EEG09170.1}; TaxID=279714 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
LysR family transcriptional regulator
OR_07232018_dam_0_1um_scaffold_619_9
Pseudomonas sp. ES3-33, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5913..7001
DNA (1089bp) protein (363aa)
taurine catabolism dioxygenase TauD n=1 Tax=Pseudomonas fuscovaginae RepID=UPI0002F6085B
Taurine catabolism dioxygenase TauD {ECO:0000313|EMBL:KJH75555.1}; TaxID=1628833 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. ES3-33.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_619_10

Not on your lists

7035..7799
DNA (765bp) protein (255aa)
Putative permease n=1 Tax=mine drainage metagenome RepID=E6PVA4_9ZZZZ
Putative permease {ECO:0000313|EMBL:CBH98861.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative permease
OR_07232018_dam_0_1um_scaffold_619_11
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7858..8940)
DNA (1083bp) protein (361aa)
Signal recognition particle receptor FtsY n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CSF3_THIA3
ftsY; Cell division protein ftsY homolog
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_619_12
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8972..9661
DNA (690bp) protein (230aa)
Putative SAM-dependent methyltransferase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CSF2_THIA3
putative SAM-dependent methyltransferase
Putative SAM-dependent methyltransferase {ECO:0000313|EMBL:CAZ87680.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_619_13
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9696..10193
DNA (498bp) protein (166aa)
coaD; Phosphopantetheine adenylyltransferase (Pantetheine-phosphate adenylyltransferase) (PPAT) (Dephospho-CoA pyrophosphorylase) (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Phosphopantetheine adenylyltransferase n=2 Tax=Thiomonas RepID=D5X6L3_THIK1
OR_07232018_dam_0_1um_scaffold_619_14
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10204..10467
DNA (264bp) protein (88aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6L2_THIK1
Ferredoxin (4Fe-4S cluster-containing protein) (Fdx-like) {ECO:0000313|EMBL:CDW94543.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
4Fe-4S ferredoxin
OR_07232018_dam_0_1um_scaffold_619_15
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10484..10918)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CSE9_THIA3
hypothetical protein; putative exported protein
Uncharacterized protein {ECO:0000313|EMBL:CAZ87677.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_619_16
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10921..11526)
DNA (606bp) protein (202aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Peptidyl-tRNA hydrolase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6L0_THIK1
OR_07232018_dam_0_1um_scaffold_619_17
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11554..12597)
DNA (1044bp) protein (348aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6K9_THIK1
NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein
OR_07232018_dam_0_1um_scaffold_619_18
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12614..13093)
DNA (480bp) protein (160aa)
Protein-export protein SecB n=2 Tax=Thiomonas RepID=D5X6K8_THIK1
putative Bacterial protein export chaperone SecB
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
OR_07232018_dam_0_1um_scaffold_619_19
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13197..13460)
DNA (264bp) protein (88aa)
Glutaredoxin 3 n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6K7_THIK1
glutaredoxin 3
Glutaredoxin 3 {ECO:0000313|EMBL:ADG30134.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_619_20
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13468..13878)
DNA (411bp) protein (137aa)
Putative Thiosulfate sulfurtransferase {ECO:0000313|EMBL:CAZ87672.1}; EC=2.8.1.1 {ECO:0000313|EMBL:CAZ87672.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Rhodanese domain protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X6K6_THIK1
rhodanese domain-containing protein
OR_07232018_dam_0_1um_scaffold_619_21
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14062..14769
DNA (708bp) protein (236aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) (EC:5.4.2.1)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=2 Tax=Thiomonas RepID=D5X6K5_THIK1
OR_07232018_dam_0_1um_scaffold_619_22
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14895..15308
DNA (414bp) protein (138aa)
putative Peptidase S41A, C-terminal protease (EC:3.4.21.102)
Putative Peptidase S41A, C-terminal protease {ECO:0000313|EMBL:CAZ87670.1}; EC=3.4.21.102 {ECO:0000313|EMBL:CAZ87670.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Putative Peptidase S41A, C-terminal protease n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CSE2_THIA3
Displaying 22 items

View Taxonomy