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OR_07232018_dam_0_1um_scaffold_700

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
OR_07232018_dam_0_1um_scaffold_700_1
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..381
DNA (381bp) protein (127aa)
Uncharacterized protein n=2 Tax=root RepID=E6PNX7_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:CDW95175.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative Mobilization protein MobB
OR_07232018_dam_0_1um_scaffold_700_2
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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356..2524
DNA (2169bp) protein (723aa)
Putative Relaxase/mobilization nuclease family protein n=1 Tax=mine drainage metagenome RepID=E6PNX6_9ZZZZ
Putative Relaxase/mobilization nuclease family protein {ECO:0000313|EMBL:CDW95174.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
traI; Relaxase/Mobilisation nuclease
OR_07232018_dam_0_1um_scaffold_700_3
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2554..2889)
DNA (336bp) protein (112aa)
plasmid stabilization protein n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI00023764DD
KluB {ECO:0000313|EMBL:CDW96542.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
plasmid stabilization system protein
OR_07232018_dam_0_1um_scaffold_700_4
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2886..3155)
DNA (270bp) protein (90aa)
Putative transcriptional regulator, CopG/Arc/MetJ family n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X762_THIK1
KluA {ECO:0000313|EMBL:CDW96543.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
CopG family transcriptional regulator
OR_07232018_dam_0_1um_scaffold_700_trna_1
unknown

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comp(3432..3506)
DNA (75bp)
transferRNA Arg
OR_07232018_dam_0_1um_scaffold_700_5
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3580..5067
DNA (1488bp) protein (496aa)
Virulence factor MVIN family protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X682_THIK1
Virulence factor MVIN family protein {ECO:0000313|EMBL:CDW94099.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
virulence factor MVIN family protein
OR_07232018_dam_0_1um_scaffold_700_6
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5080..5913
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CMK6_THIA3
hypothetical protein; putative Phosphoenolpyruvate/pyruvate domain
Uncharacterized protein {ECO:0000313|EMBL:CAZ89784.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
OR_07232018_dam_0_1um_scaffold_700_7
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5920..6477
DNA (558bp) protein (186aa)
undecaprenyl-phosphate galactose phosphotransferase (EC:2.7.8.6)
Undecaprenyl-phosphate galactose phosphotransferase {ECO:0000313|EMBL:ADG31997.1}; EC=2.7.8.6 {ECO:0000313|EMBL:ADG31997.1};; Flags: Precursor;; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
Undecaprenyl-phosphate galactose phosphotransferase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X680_THIK1
OR_07232018_dam_0_1um_scaffold_700_8
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7151..8404
DNA (1254bp) protein (418aa)
Asparagine synthetase {ECO:0000313|EMBL:CDW94102.1}; EC=6.3.5.4 {ECO:0000313|EMBL:CDW94102.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Asparagine synthetase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X679_THIK1
asparagine synthase
OR_07232018_dam_0_1um_scaffold_700_9
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8401..9672
DNA (1272bp) protein (424aa)
Putative uncharacterized protein n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X678_THIK1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG31995.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_700_10
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9669..10367
DNA (699bp) protein (233aa)
putative N-acylneuraminate cytidylyltransferase (EC:2.7.7.43)
Putative N-acylneuraminate cytidylyltransferase {ECO:0000313|EMBL:CAZ89780.1}; EC=2.7.7.43 {ECO:0000313|EMBL:CAZ89780.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Putative N-acylneuraminate cytidylyltransferase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CMK2_THIA3
OR_07232018_dam_0_1um_scaffold_700_11

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10382..11428
DNA (1047bp) protein (349aa)
Putative N-acylneuraminate-9-phosphate synthase {ECO:0000313|EMBL:CBH96618.1}; EC=2.5.1.57 {ECO:0000313|EMBL:CBH96618.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
N-acetylneuraminate synthase (EC:2.5.1.56)
Putative N-acylneuraminate-9-phosphate synthase n=1 Tax=mine drainage metagenome RepID=E6PNW6_9ZZZZ
OR_07232018_dam_0_1um_scaffold_700_12
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11443..11715)
DNA (273bp) protein (91aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YGQ6_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
OR_07232018_dam_0_1um_scaffold_700_13
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11780..12088)
DNA (309bp) protein (103aa)
hypothetical protein; K07075 id=12549667 bin=BDI species=Curvibacter putative symbiont of Hydra magnipapillata genus=Curvibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
OR_07232018_dam_0_1um_scaffold_700_14
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12300..14213
DNA (1914bp) protein (638aa)
Nerd domain protein id=1267953 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
OR_07232018_dam_0_1um_scaffold_700_15
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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14241..14492
DNA (252bp) protein (84aa)
Prevent-host-death family protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RLJ9_ACCPU
prevent-host-death family protein
Prevent-host-death family protein {ECO:0000313|EMBL:ACV33893.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
OR_07232018_dam_0_1um_scaffold_700_16
Candidatus Accumulibacter sp. SK-11, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

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14489..14905
DNA (417bp) protein (139aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1454000 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. SK-11.;"
hypothetical protein n=1 Tax=Caldimonas manganoxidans RepID=UPI000373770B
PilT protein domain-containing protein
OR_07232018_dam_0_1um_scaffold_700_17
Alishewanella aestuarii, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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15038..18094
DNA (3057bp) protein (1019aa)
Type I restriction-modification system restriction subunit n=1 Tax=Alishewanella aestuarii B11 RepID=J1QMC3_9ALTE
Type I restriction-modification system restriction subunit {ECO:0000313|EMBL:EJI86761.1}; TaxID=1197174 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella aestuarii B11.;"
DEAD/DEAH box helicase
OR_07232018_dam_0_1um_scaffold_700_18
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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18084..19379
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4KXK3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ESQ09903.1}; TaxID=1385625 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
restriction modification system DNA specificity domain-containing protein
OR_07232018_dam_0_1um_scaffold_700_19
Pseudomonas sp. CFII68, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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19576..20220
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Pseudomonas mendocina RepID=UPI0003812C60
Uncharacterized protein {ECO:0000313|EMBL:EPJ88291.1}; TaxID=911243 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CFII68.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_700_20

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20211..20594
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AR50_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD52244.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
OR_07232018_dam_0_1um_scaffold_700_21
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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20591..22198
DNA (1608bp) protein (536aa)
type I restriction-modification protein subunit M n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B495CA
Type I restriction-modification protein subunit M {ECO:0000313|EMBL:KFN43545.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
type I restriction-modification system, M subunit
OR_07232018_dam_0_1um_scaffold_700_22

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22234..23403
DNA (1170bp) protein (390aa)
Putative UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:CBH96617.1}; EC=5.1.3.14 {ECO:0000313|EMBL:CBH96617.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
putative UDP-N-acetylglucosamine 2-epimerase (EC:5.1.3.14)
Putative UDP-N-acetylglucosamine 2-epimerase n=1 Tax=mine drainage metagenome RepID=E6PNW5_9ZZZZ
OR_07232018_dam_0_1um_scaffold_700_23
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23411..24061
DNA (651bp) protein (217aa)
Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X576_THIK1
sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family
Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family {ECO:0000313|EMBL:ADG29900.1}; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas intermedia (strain K12) (Thiobacillus intermedius).;"
OR_07232018_dam_0_1um_scaffold_700_24
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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24058..25560
DNA (1503bp) protein (501aa)
putative Glutamine--scyllo-inositol transaminase (EC:2.6.1.50)
Putative Glutamine--scyllo-inositol transaminase {ECO:0000313|EMBL:CAZ87316.1}; EC=2.6.1.50 {ECO:0000313|EMBL:CAZ87316.1};; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Putative Glutamine--scyllo-inositol transaminase n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CRS5_THIA3
OR_07232018_dam_0_1um_scaffold_700_25
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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25557..27392
DNA (1836bp) protein (612aa)
Putative dTDP-glucose-4,6-dehydratase/UDP-glucose 4-epimerase (WeeK) (WbpM) {ECO:0000313|EMBL:CDW92419.1}; EC=5.1.3.2 {ECO:0000313|EMBL:CDW92419.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
Polysaccharide biosynthesis protein CapD n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X574_THIK1
polysaccharide biosynthesis protein CapD
OR_07232018_dam_0_1um_scaffold_700_26
Thiomonas arsenitoxydans, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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27614..28984
DNA (1371bp) protein (457aa)
Sulfate transporter n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CRS3_THIA3
sulfate transporter
Sulfate transporter {ECO:0000313|EMBL:CAZ87314.1}; TaxID=426114 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As).;"
Displaying 27 items

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