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04302015_16_scaffold_891

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_16_scaffold_891_1
Neisseria shayeganii, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..411)
DNA (411bp) protein (137aa)
tufA; elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu
Elongation factor Tu (Fragment) n=1 Tax=Neisseria shayeganii 871 RepID=G4CLM1_9NEIS
Elongation factor Tu {ECO:0000256|RuleBase:RU004061}; Flags: Fragment;; TaxID=1032488 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria shayeganii 871.;"
04302015_16_scaffold_891_2
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(805..3375)
DNA (2571bp) protein (857aa)
ATP-dependent chaperone ClpB n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DAQ8_THICA rbh
ATP-dependent chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB rbh
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
04302015_16_scaffold_891_3
unknown

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comp(3520..3708)
DNA (189bp) protein (63aa)

This feature has no annotations

04302015_16_scaffold_891_4
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4016..4594)
DNA (579bp) protein (193aa)
umuDC operon protein-like protein n=1 Tax=Leeia oryzae RepID=UPI000382871E
lexa repressor
Lexa repressor {ECO:0000313|EMBL:BAN34928.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
04302015_16_scaffold_891_5
Pseudomonas mendocina, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4750..5469
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Marinobacterium stanieri RepID=UPI0002558FCF
alanine racemase domain-containing protein; K06997
Alanine racemase domain-containing protein {ECO:0000313|EMBL:AEB60507.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;"
04302015_16_scaffold_891_6
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

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5474..6301
DNA (828bp) protein (276aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1248727 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2); K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2]
Pyrroline-5-carboxylate reductase n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6CER3_9GAMM rbh
04302015_16_scaffold_891_7
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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6298..6867
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DAE5_THICA
hypothetical protein; K02221 YggT family protein
Uncharacterized protein {ECO:0000313|EMBL:AEG31111.1}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1).;"
04302015_16_scaffold_891_8
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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6919..8088
DNA (1170bp) protein (390aa)
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070942};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF_00296}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus.;"
homoserine O-acetyltransferase (EC:2.3.1.31); K00641 homoserine O-acetyltransferase [EC:2.3.1.31] rbh
Homoserine O-acetyltransferase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D9J9_9GAMM rbh
04302015_16_scaffold_891_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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8085..8690
DNA (606bp) protein (202aa)
Methionine biosynthesis protein MetW n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D9J8_9GAMM
methionine biosynthesis protein MetW
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
04302015_16_scaffold_891_10

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8690..9385
DNA (696bp) protein (232aa)
TraT complement resistance protein n=1 Tax=mine drainage metagenome RepID=E6QD09_9ZZZZ
TraT complement resistance protein {ECO:0000313|EMBL:CBI05085.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
incF plasmid conjugative transfer surface exclusion protein TraT
04302015_16_scaffold_891_11
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9389..9754)
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00035F290D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL73674.1}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
04302015_16_scaffold_891_12
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9773..10501)
DNA (729bp) protein (243aa)
tRNA/rRNA cytosine-C5-methylase; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
tRNA/rRNA cytosine-C5-methylase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QP79_AZOSU
tRNA/rRNA cytosine-C5-methylase {ECO:0000313|EMBL:AEV25932.1}; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
Displaying 12 items

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