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04302015_16_scaffold_1094

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_16_scaffold_1094_1
BJP_S1_SUB10_Methylophilales_55_32, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..944)
DNA (942bp) protein (314aa)
alcohol dehydrogenase (EC:1.1.1.1)
Alcohol dehydrogenase n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZGD6_9PROT
Tax=BJP_S1_SUB10_Methylophilales_55_32
04302015_16_scaffold_1094_2
Marinomonas posidonica, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(962..1567)
DNA (606bp) protein (202aa)
5-formyltetrahydrofolate cyclo-ligase; K01934 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=491952 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas posidonica (strain CECT 7376 / NCIMB 14433 / IVIA-Po-181).;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Marinomonas posidonica (strain CECT 7376 / NCIMB 14433 / IVIA-Po-181) RepID=F6CYR7_MARPP
04302015_16_scaffold_1094_3
unknown

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comp(1827..2120)
DNA (294bp) protein (98aa)

This feature has no annotations

04302015_16_scaffold_1094_4
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2186..2725
DNA (540bp) protein (180aa)
UPF0149 protein PPUTLS46_017979 n=2 Tax=Pseudomonas putida RepID=M7QYQ4_PSEPU
hypothetical protein
UPF0149 protein T1E_4426 {ECO:0000256|HAMAP-Rule:MF_00346}; TaxID=1196325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (strain DOT-T1E).;"
04302015_16_scaffold_1094_5
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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2745..4055
DNA (1311bp) protein (437aa)
peptidase M24; K01262 Xaa-Pro aminopeptidase [EC:3.4.11.9] rbh
Aminopeptidase P. Metallo peptidase. MEROPS family M24B {ECO:0000313|EMBL:ABB42151.1}; EC=3.4.11.9 {ECO:0000313|EMBL:ABB42151.1};; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
Aminopeptidase P. Metallo peptidase. MEROPS family M24B n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31FC2_THICR rbh
04302015_16_scaffold_1094_6
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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4037..5218
DNA (1182bp) protein (394aa)
UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D867_9GAMM
Ubiquinone biosynthesis protein UbiH {ECO:0000313|EMBL:AHF00896.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioalkalimicrobium aerophilum AL3.;"
04302015_16_scaffold_1094_7
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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5221..6291
DNA (1071bp) protein (357aa)
UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase; K03184 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [EC:1.14.13.-]
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00035C32D8
Tax=CG_Thiomicrospira_01
04302015_16_scaffold_1094_8
Marinobacterium sp. AK27, Marinobacterium, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6284..7195
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Gallionella sp. SCGC AAA018-N21 RepID=UPI00035C4E15
Potassium voltage-gated channel subfamily KQT {ECO:0000313|EMBL:KEA62383.1}; TaxID=1232683 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacterium.;" source="Marinobacterium sp. AK27.;"
Ion transport protein
04302015_16_scaffold_1094_9
Yersinia enterocolitica, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7182..7565
DNA (384bp) protein (128aa)
glycine cleavage system protein H n=1 Tax=Yersinia enterocolitica RepID=UPI00030E5C2C
Glycine cleavage system protein H {ECO:0000313|EMBL:AKF36890.1}; TaxID=630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia enterocolitica.;"
glycine cleavage system protein H
04302015_16_scaffold_1094_10
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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7693..8643
DNA (951bp) protein (317aa)
Transcriptional regulator, LysR family n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31FC6_THICR rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABB42147.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (strain XCL-2).;"
04302015_16_scaffold_1094_11
Pseudomonas alkylphenolia, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8624..9925)
DNA (1302bp) protein (434aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=237609 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alkylphenolia.;"
tilS; tRNA(Ile)-lysidine synthetase; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
tRNA(Ile)-lysidine synthase n=1 Tax=Pseudomonas sp. M47T1 RepID=I4N8R0_9PSED
04302015_16_scaffold_1094_12
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9930..10895)
DNA (966bp) protein (322aa)
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (EC:6.4.1.2); K01962 acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2] rbh
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00176990}; Short=ACCase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_00823, ECO:0000256|SAAS:SAAS00057486};; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thioa
acetyl-CoA carboxylase subunit alpha n=1 Tax=Thiomicrospira halophila RepID=UPI0003650484 rbh
04302015_16_scaffold_1094_13
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10950..12665)
DNA (1716bp) protein (572aa)
YcaO-domain protein n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DC91_THICA rbh
hypothetical protein; K09136 ribosomal protein S12 methylthiotransferase rbh
Tax=CG_Thiomicrospira_01
Displaying 13 items

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