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04302015_12_scaffold_1366

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_1366_1
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..142
DNA (141bp) protein (47aa)
NADH ubiquinone oxidoreductase subunit A; K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit A n=2 Tax=Acidithiobacillus caldus RepID=F9ZSC8_ACICS
Uncharacterized protein {ECO:0000313|EMBL:AKH20345.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
04302015_12_scaffold_1366_2
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

133..609
DNA (477bp) protein (159aa)
NADH dehydrogenase subunit B (EC:1.6.5.3); K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000255|HAMAP-Rule:MF_01356}; NDH-1 subunit
NADH-quinone oxidoreductase subunit B n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=NUOB_THICR rbh
04302015_12_scaffold_1366_3
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

633..1301
DNA (669bp) protein (223aa)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit
NAD(P)H-quinone oxidoreductase subunit J; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3]
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00037F6EC2
04302015_12_scaffold_1366_4
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1303..1890
DNA (588bp) protein (196aa)
NADH dehydrogenase subunit D (EC:1.6.5.3); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3]
NADH dehydrogenase subunit D n=1 Tax=Thiomicrospira halophila RepID=UPI00037E9BFC
Tax=CG_Thiomicrospira_01
04302015_12_scaffold_1366_5
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1887..2501
DNA (615bp) protein (205aa)
NAD(P)H-quinone oxidoreductase subunit H (EC:1.6.99.5); K00333 NADH-quinone oxidoreductase subunit D [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit
NADH-quinone oxidoreductase subunit D n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DC26_THICA
04302015_12_scaffold_1366_6
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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2501..2983
DNA (483bp) protein (161aa)
NADH-quinone oxidoreductase subunit E (EC:1.6.99.5); K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3]
NADH-quinone oxidoreductase, E subunit n=1 Tax=Beggiatoa alba B18LD RepID=I3CGL3_9GAMM
NADH dehydrogenase {ECO:0000313|EMBL:KDN95485.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio mar
04302015_12_scaffold_1366_7
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2990..4264
DNA (1275bp) protein (425aa)
NADH dehydrogenase {ECO:0000313|EMBL:KDN95484.1}; EC=1.6.99.5 {ECO:0000313|EMBL:KDN95484.1};; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hy
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3]
NADH dehydrogenase I chain F n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31HF5_THICR rbh
04302015_12_scaffold_1366_8
Halorhodospira halochloris, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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4304..6589
DNA (2286bp) protein (762aa)
NADH dehydrogenase {ECO:0000313|EMBL:AHK78576.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AHK78576.1};; TaxID=1354791 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae;
NADH dehydrogenase subunit G; K00336 NADH-quinone oxidoreductase subunit G [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit D n=2 Tax=sulfur-oxidizing symbionts RepID=G2DDD3_9GAMM
04302015_12_scaffold_1366_9
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6600..7676
DNA (1077bp) protein (359aa)
respiratory-chain NADH dehydrogenase subunit 1; K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit
NADH-quinone oxidoreductase subunit H n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=NUOH_THICR rbh
04302015_12_scaffold_1366_10
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7673..8164
DNA (492bp) protein (164aa)
NADH dehydrogenase subunit I (EC:1.6.5.3); K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01351};; NADH dehydrogenase I subunit I {ECO:0000256|HAMAP-Rule:MF_01351}; NDH-1 subunit
NADH-quinone oxidoreductase subunit I n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=NUOI_THICR
04302015_12_scaffold_1366_11
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8179..8814
DNA (636bp) protein (212aa)
NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; K00339 NADH-quinone oxidoreductase subunit J [EC:1.6.5.3]
NADH dehydrogenase I chain J n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31HF1_THICR
NADH dehydrogenase I chain J {ECO:0000313|EMBL:ABB41422.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicro
04302015_12_scaffold_1366_12
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8814..9128
DNA (315bp) protein (105aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit
NADH-ubiquinone oxidoreductase, chain 4L; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit K n=1 Tax=Thiomicrospira halophila RepID=UPI000360E2E8
04302015_12_scaffold_1366_13
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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9344..11083
DNA (1740bp) protein (580aa)
proton-translocating NADH-quinone oxidoreductase subunit L (EC:1.6.99.5); K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3]
Proton-translocating NADH-quinone oxidoreductase, chain L n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8D9_9GAMM rbh
NADH:ubiquinone oxidoreductase subunit L {ECO:0000313|EMBL:AHF01415.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;"
04302015_12_scaffold_1366_14
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11115..12626
DNA (1512bp) protein (504aa)
NADH:ubiquinone oxidoreductase subunit M {ECO:0000313|EMBL:AHF01414.1}; EC=1.6.99.5 {ECO:0000313|EMBL:AHF01414.1};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales;
proton-translocating NADH-quinone oxidoreductase subunit M (EC:1.6.99.5); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] rbh
Proton-translocating NADH-quinone oxidoreductase, chain M n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8D8_9GAMM rbh
04302015_12_scaffold_1366_15
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12646..13986
DNA (1341bp) protein (447aa)
NADH dehydrogenase subunit N (EC:1.6.5.3); K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit N {ECO:0000255|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000255|HAMAP-Rule:MF_00445}; NDH-1 subunit
NADH-quinone oxidoreductase subunit N n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=NUON_THICR
04302015_12_scaffold_1366_16
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13999..14307
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BRP6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIJ34039.1}; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205
hypothetical protein
04302015_12_scaffold_1366_17

Not on your lists

14401..15009
DNA (609bp) protein (203aa)
nadD; nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18)
nicotinic acid mononucleotide adenylyltransferase n=1 Tax=Pseudomonas pelagia RepID=UPI0003A02557
Uncharacterized protein {ECO:0000313|EMBL:KKO03188.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
04302015_12_scaffold_1366_18
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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15016..15348
DNA (333bp) protein (111aa)
iojap family protein n=1 Tax=Methylomonas sp. MK1 RepID=UPI000378A976
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Meth
iojap family protein; K09710 ribosome-associated protein
04302015_12_scaffold_1366_19
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15516..15986
DNA (471bp) protein (157aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rR
ribosomal RNA large subunit methyltransferase H; K00783 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00036FC975
04302015_12_scaffold_1366_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15997..16563
DNA (567bp) protein (189aa)
Maf-like protein UU7_01457 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5P5_9GAMM
Maf-like protein UU7_01457 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanob
MAF protein; K06287 septum formation protein
04302015_12_scaffold_1366_21
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16560..18053
DNA (1494bp) protein (498aa)
ribonuclease; K08301 ribonuclease G [EC:3.1.26.-]
ribonuclease G n=1 Tax=Thiomicrospira arctica RepID=UPI0003623E95 rbh
Ribonuclease G {ECO:0000313|EMBL:KDN96639.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibrio marinus
04302015_12_scaffold_1366_22
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18054..21596
DNA (3543bp) protein (1181aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI0003767920
Uncharacterized protein {ECO:0000313|EMBL:KDN96640.1}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogenovibri
transmembrane protein
04302015_12_scaffold_1366_23
Aeromonas veronii, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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21577..22431
DNA (855bp) protein (285aa)
Amidohydrolase n=1 Tax=Aeromonas veronii Hm21 RepID=U1H1D3_9GAMM
Amidohydrolase {ECO:0000313|EMBL:ERF62589.1}; TaxID=1347420 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas veronii Hm21.;"
carbon-nitrogen family hydrolase
04302015_12_scaffold_1366_24
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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22510..24429
DNA (1920bp) protein (640aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:000
thrS; threonine--tRNA ligase (EC:6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BQ59_9GAMM rbh
04302015_12_scaffold_1366_25
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24478..25014
DNA (537bp) protein (179aa)
Translation initiation factor IF-3 n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DCF7_9GAMM
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsia
translation initiation factor IF-3; K02520 translation initiation factor IF-3
04302015_12_scaffold_1366_26
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


25114..25311
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=1 Tax=Thiomicrospira halophila RepID=UPI00036D9628
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
50S ribosomal protein L35 {ECO:0000255|HAMAP-Rule:MF_00514}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicr
04302015_12_scaffold_1366_27
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


25333..25692
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Azoarcus sp. (strain BH72) RepID=RL20_AZOSB
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain
04302015_12_scaffold_1366_28
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


25828..26820
DNA (993bp) protein (331aa)
Phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DCG0_9GAMM rbh
Tax=CG_Thiomicrospira_01
04302015_12_scaffold_1366_29
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


26830..29205
DNA (2376bp) protein (792aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tR
phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Methylomicrobium album BG8 RepID=H8GQ79_METAL
04302015_12_scaffold_1366_30
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29218..29511
DNA (294bp) protein (98aa)
DNA-binding protein n=1 Tax=Thiomicrospira arctica RepID=UPI000377BB56
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=28885 species="Bacteria; Proteobacteri
integration host factor subunit alpha; K04764 integration host factor subunit alpha
Displaying items 1-30 of 31 in total

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