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04302015_12_scaffold_1575

Search features with annotation key words

Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_1575_1
Pseudomonas parafulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36..734)
DNA (699bp) protein (233aa)
rlmL; 23S rRNA m(2)G2445 methyltransferase; K12297 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
hypothetical protein n=1 Tax=Algicola sagamiensis RepID=UPI00037CFE73
Ribosomal RNA large subunit methyltransferase K/L {ECO:0000256|HAMAP-Rule:MF_01858, ECO:0000256|SAAS:SAAS00183812}; TaxID=157782 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales
04302015_12_scaffold_1575_2
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(769..2253)
DNA (1485bp) protein (495aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000369F5BC rbh
Ribosomal RNA large subunit methyltransferase K/L {ECO:0000256|HAMAP-Rule:MF_01858, ECO:0000256|SAAS:SAAS00183812}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales;
rlmL; 23S rRNA m(2)G2445 methyltransferase
04302015_12_scaffold_1575_3
unknown

Not on your lists

2356..3168
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000382B12F
04302015_12_scaffold_1575_4
Sedimenticola sp. SIP-G1, Sedimenticola, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3175..3798
DNA (624bp) protein (208aa)
Phosphomethylpyrimidine kinase n=2 Tax=sulfur-oxidizing symbionts RepID=G2DDH9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AKH20794.1}; TaxID=1543721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Sedimenticola.;" source="Sedimenticola sp. SIP-G1.;"
PA-phosphatase-like phosphoesterase
04302015_12_scaffold_1575_5
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3881..4852
DNA (972bp) protein (324aa)
trans-hexaprenyltranstransferase (EC:2.5.1.30); K02523 octaprenyl-diphosphate synthase [EC:2.5.1.90]
Polyprenyl synthetase n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8T3_9GAMM rbh
Octaprenyl diphosphate synthase {ECO:0000313|EMBL:AHF00521.1}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="T
04302015_12_scaffold_1575_6
unknown

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comp(4836..5342)
DNA (507bp) protein (169aa)

This feature has no annotations

04302015_12_scaffold_1575_7
Halomonas sp. BC04, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5345..6529)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Thauera sp. 28 RepID=N6ZCU2_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EWG99225.1}; TaxID=1403540 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. BC04.
hypothetical protein
04302015_12_scaffold_1575_8
Nitrincola sp. AK23, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6526..8157)
DNA (1632bp) protein (544aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1229521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" s
ATP-binding region, ATPase-like protein n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=Q21L07_SACD2 rbh
cellulose binding, type IV
04302015_12_scaffold_1575_9
Vibrio brasiliensis, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8201..8983)
DNA (783bp) protein (261aa)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase n=1 Tax=Vibrio brasiliensis LMG 20546 RepID=E8LTJ5_9VIBR
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EGA66088.1}; TaxID=945543 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionacea
response regulator receiver modulated diguanylate cyclase/phosphodiesterase
04302015_12_scaffold_1575_10
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9064..9657)
DNA (594bp) protein (198aa)
Phosphoheptose isomerase {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089187}; EC=5.3.1.28 {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089180};; Sedoheptulose 7-phosphate isom
phosphoheptose isomerase (EC:5.3.1.-)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002DDCE03
04302015_12_scaffold_1575_11
Bacillus boroniphilus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9654..10280)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Bacillus sp. 17376 RepID=V6T5A5_9BACI
SAM-dependent methyltransferases {ECO:0000313|EMBL:GAE44363.1}; TaxID=1294265 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus boroniphilus JCM 21738.;"
slr1183; hypothetical protein
04302015_12_scaffold_1575_12
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10277..12418)
DNA (2142bp) protein (714aa)
MscS Mechanosensitive ion channel n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A4B4_METMM rbh
mechanosensitive ion channel MscS
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:AEG00330.1}; TaxID=857087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylo
04302015_12_scaffold_1575_13
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12405..13301)
DNA (897bp) protein (299aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-]
Lipid A biosynthesis acyltransferase n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6DB13_THICA
Lipid A biosynthesis acyltransferase {ECO:0000313|EMBL:AEG32346.1}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" sour
04302015_12_scaffold_1575_14
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13285..14043)
DNA (759bp) protein (253aa)
PP-loop family protein n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31J95_THICR rbh
PP-loop protein
Tax=CG_Thiomicrospira_01
04302015_12_scaffold_1575_15
unknown

Not on your lists

comp(14030..14590)
DNA (561bp) protein (187aa)

This feature has no annotations

04302015_12_scaffold_1575_16
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14594..15364)
DNA (771bp) protein (257aa)
Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31JA3_THICR rbh
hypothetical protein; K07090
Uncharacterized protein {ECO:0000313|EMBL:ABB40770.1}; Flags: Precursor;; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" sou
04302015_12_scaffold_1575_17
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15972..16325)
DNA (354bp) protein (118aa)
ferredoxin n=1 Tax=Marinobacterium stanieri RepID=UPI00025598BD
ferredoxin
Ferredoxin {ECO:0000313|EMBL:ABB41141.1}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicrospira crunogena (s
04302015_12_scaffold_1575_18
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16431..16676
DNA (246bp) protein (82aa)
Transcriptional regulator, Fis family n=3 Tax=root RepID=B5ELA9_ACIF5
Fis family transcriptional regulator; K03557 Fis family transcriptional regulator, factor for inversion stimulation protein
Tax=CG_Thiomicrospira_01
04302015_12_scaffold_1575_19
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16744..17670
DNA (927bp) protein (309aa)
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.
Bifunctional purine biosynthesis protein PurH n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4DC13_9GAMM
Bifunctional purine biosynthesis protein PurH {ECO:0000256|HAMAP-Rule:MF_00139, ECO:0000256|SAAS:SAAS00010516}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Pisc
Displaying 19 items

View Taxonomy
NameRatio
Gammaproteobacteria
73.68%
unknown
15.79%
Deltaproteobacteria
5.26%
Bacilli
5.26%
Gammaproteobacteria: 0.7368421052631579unknown: 0.15789473684210525Bacilli: 0.05263157894736842Deltaproteobacteria: 0.05263157894736842Gammaproteobacteriaunknown