ggKbase home page

04302015_12_scaffold_638

Search features with annotation key words

Displaying 13 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
04302015_12_scaffold_638_1
Nitrincola sp. AK23, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..462)
DNA (462bp) protein (154aa)
Nuclease {ECO:0000313|EMBL:EXJ11127.1}; EC=3.1.30.- {ECO:0000313|EMBL:EXJ11127.1};; TaxID=1229521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitri
hypothetical protein n=1 Tax=Methylovulum miyakonense RepID=UPI00035E807B
DNA/RNA non-specific endonuclease; K01173 endonuclease G, mitochondrial
04302015_12_scaffold_638_2
Pseudomonas entomophila, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(501..2108)
DNA (1608bp) protein (536aa)
Putative methyl-accepting chemotaxis transducer n=1 Tax=Pseudomonas entomophila (strain L48) RepID=Q1I3S0_PSEE4
methyl-accepting chemotaxis transducer; K03406 methyl-accepting chemotaxis protein
Putative methyl-accepting chemotaxis transducer {ECO:0000313|EMBL:CAK17716.1}; TaxID=384676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" so
04302015_12_scaffold_638_3
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2178..3596)
DNA (1419bp) protein (473aa)
GTPase Der n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8K7_9GAMM rbh
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobact
GTP-binding protein engA; K03977 GTP-binding protein rbh
04302015_12_scaffold_638_4
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3602..4759)
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000372034A
Pyrrolo-quinoline quinone
Tax=CG_Thiomicrospira_01
04302015_12_scaffold_638_5
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4756..5400)
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI000362945F
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
04302015_12_scaffold_638_6

Not on your lists


comp(5435..6703)
DNA (1269bp) protein (423aa)
histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21]
Histidine--tRNA ligase n=1 Tax=Methylophaga lonarensis MPL RepID=M7NUE2_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN51865.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
04302015_12_scaffold_638_7
Mannheimia varigena, Mannheimia, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6713..7183)
DNA (471bp) protein (157aa)
DNA-binding helix-turn-helix protein n=1 Tax=Haemophilus paraphrohaemolyticus HK411 PF3_9PAST">RepID=I2NPF3_9PAST
Uncharacterized protein {ECO:0000313|EMBL:AHG76199.1}; TaxID=1433287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia.;" source="Mannheimia varigena
DNA-binding protein
04302015_12_scaffold_638_8
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7180..8346)
DNA (1167bp) protein (389aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:
ribosomal RNA large subunit methyltransferase N; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
50S rRNA methyltransferase n=1 Tax=Thiomicrospira arctica RepID=UPI00037959F7 rbh
04302015_12_scaffold_638_9
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8346..8768)
DNA (423bp) protein (141aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451, ECO:0000256|RuleBase:RU004013}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.
nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6]
Nucleoside diphosphate kinase n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=NDK_SACD2
04302015_12_scaffold_638_10
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8916..9980)
DNA (1065bp) protein (355aa)
Fructose-bisphosphate aldolase {ECO:0000313|EMBL:AHF00440.1}; EC=4.1.2.13 {ECO:0000313|EMBL:AHF00440.1};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Pisciricke
fructose-bisphosphate aldolase (EC:4.1.2.13); K01624 fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
Fructose-bisphosphate aldolase, class II, Calvin cycle subtype n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D917_9GAMM rbh
04302015_12_scaffold_638_11
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10034..11488)
DNA (1455bp) protein (485aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; H
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40]
pyruvate kinase n=1 Tax=Thiomicrospira halophila RepID=UPI00037AF8A2 rbh
04302015_12_scaffold_638_12
Sulfuricella sp. T08, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11616..12797)
DNA (1182bp) protein (394aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=1632857 species="Bacteria;
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABB9_9PROT rbh
04302015_12_scaffold_638_13
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12886..13854)
DNA (969bp) protein (323aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichale
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12]
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D920_9GAMM rbh
Displaying 13 items

View Taxonomy