ggKbase home page

PLM3-1_50_b2_sep16_scaffold_1866

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b2_sep16_scaffold_1866_1
unknown

Not on your lists

comp(2..166)
DNA (165bp) protein (55aa)

This feature has no annotations

PLM3-1_50_b2_sep16_scaffold_1866_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

301..1212
DNA (912bp) protein (304aa)
Aldo/keto reductase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q022Y6_SOLUE
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ABJ83960.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3-1_50_b2_sep16_scaffold_1866_3
Desulfosporosinus youngiae, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1609..1956
DNA (348bp) protein (116aa)
Putative uncharacterized protein Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XX80_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ91020.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus youngiae DSM 17734.;"
PLM3-1_50_b2_sep16_scaffold_1866_4
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(2092..2970)
DNA (879bp) protein (293aa)
Putative uncharacterized protein bin=GWC2_Syntrophobacterales_56_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=CG_Elusi_05
PLM3-1_50_b2_sep16_scaffold_1866_5
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3008..5311)
DNA (2304bp) protein (768aa)
Putative uncharacterized protein Tax=uncultured Desulfobacterium sp. RepID=E1YCN8_9DELT
SNF2-like protein
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM3-1_50_b2_sep16_scaffold_1866_6
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

5657..6427
DNA (771bp) protein (257aa)
GMP synthase-Glutamine amidotransferase domain (EC:6.3.5.2)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI00036EB463
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM3-1_50_b2_sep16_scaffold_1866_7
RLO_PLX_64_10, Bacteria

Not on your lists

6449..6613
DNA (165bp) protein (55aa)
Putative Protease QmcA Tax=Candidatus Nitrospira defluvii RepID=D8P8Z1_9BACT
qmcA; putative protease QmcA
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM3-1_50_b2_sep16_scaffold_1866_8
unknown

Not on your lists

comp(6542..6715)
DNA (174bp) protein (58aa)

This feature has no annotations

PLM3-1_50_b2_sep16_scaffold_1866_9
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6720..7541)
DNA (822bp) protein (274aa)
mutM1; formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
5-hydroxymethyluracil DNA glycosylase Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036DC580
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_50_b2_sep16_scaffold_1866_10
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7555..8418)
DNA (864bp) protein (288aa)
Ribosomal RNA small subunit methyltransferase A Tax=Geobacter metallireducens RepID=RSMA_GEOMG
rsmA; KsgA/Dim1 family 16S ribosomal RNA methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_50_b2_sep16_scaffold_1866_11
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8458..9408)
DNA (951bp) protein (317aa)
tRNA N6-adenosine threonylcarbamoyltransferase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJL9_9BACT
O-sialoglycoprotein endopeptidase, with actin-like ATPase domain (ygjD,gcp)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_50_b2_sep16_scaffold_1866_12
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9422..10108)
DNA (687bp) protein (229aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_50_b2_sep16_scaffold_1866_13
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10153..11415)
DNA (1263bp) protein (421aa)
hypothetical protein Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI000363BA39
Multimodular transpeptidase-transglycosylase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_50_b2_sep16_scaffold_1866_14
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11385..12335)
DNA (951bp) protein (317aa)
1A family penicillin-binding protein (EC:2.4.1.129)
Penicillin-binding protein, 1A family Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZWB0_DESOH
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_50_b2_sep16_scaffold_1866_15
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12450..13901)
DNA (1452bp) protein (484aa)
Serine protease do-like (EC:3.4.21.-)
Putative Serine protease do-like bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_50_b2_sep16_scaffold_1866_16
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13911..14342)
DNA (432bp) protein (144aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_50_b2_sep16_scaffold_1866_17
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14543..15409)
DNA (867bp) protein (289aa)
Uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
lipopolysaccharide heptosyltransferase II
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_50_b2_sep16_scaffold_1866_18
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15489..16568
DNA (1080bp) protein (360aa)
cysteine synthase (EC:2.5.1.47)
Cysteine synthase bin=GWD2_Deltaproteobacteria_55_8 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_50_b2_sep16_scaffold_1866_19
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16553..17365
DNA (813bp) protein (271aa)
Adenosine nucleotide alpha-hydrolase superfamily protein bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
potassium ABC transporter ATPase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_50_b2_sep16_scaffold_1866_20
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17362..18060)
DNA (699bp) protein (233aa)
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase bin=GWD2_Deltaproteobacteria_55_8 species=Paenibacillus sp. HGF7 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM3-1_50_b2_sep16_scaffold_1866_21
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18142..18624)
DNA (483bp) protein (161aa)
Transcriptional regulator, CarD domain protein bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
CarD family transcriptional regulator CdnL
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_50_b2_sep16_scaffold_1866_22
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19012..19440)
DNA (429bp) protein (143aa)
Ribosomal-protein-alanine acetyltransferase bin=GWD2_Deltaproteobacteria_55_8 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ribosomal-protein-alanine acetyltransferase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_50_b2_sep16_scaffold_1866_23
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19538..20104)
DNA (567bp) protein (189aa)
id=1993804 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_50_b2_sep16_scaffold_1866_24
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20148..20900)
DNA (753bp) protein (251aa)
4Fe-4S ferredoxin, iron-sulfur binding protein Tax=Plesiocystis pacifica SIR-1 RepID=A6G711_9DELT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_50_b2_sep16_scaffold_1866_25
unknown

Not on your lists

20987..21208
DNA (222bp) protein (74aa)

This feature has no annotations

PLM3-1_50_b2_sep16_scaffold_1866_trna_1
unknown

Not on your lists

21006..21078
DNA (73bp)
transferRNA Cys
PLM3-1_50_b2_sep16_scaffold_1866_26
unknown

Not on your lists

21464..21757
DNA (294bp) protein (98aa)

This feature has no annotations

PLM3-1_50_b2_sep16_scaffold_1866_27
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21818..22087)
DNA (270bp) protein (90aa)
Glutaredoxin, GrxC bin=GWD2_Deltaproteobacteria_55_8 species=Rhodospirillum photometricum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
glrX2; glutaredoxin 3
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_50_b2_sep16_scaffold_1866_28
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22190..22786
DNA (597bp) protein (199aa)
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase bin=GWD2_Deltaproteobacteria_55_8 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_50_b2_sep16_scaffold_1866_29
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22779..23342)
DNA (564bp) protein (188aa)
Elongation factor P bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
translation elongation factor P (EF-P)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Displaying 30 items

View Taxonomy