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PLM3-1_50_b2_sep16_scaffold_2010

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_50_b2_sep16_scaffold_2010_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(376..843)
DNA (468bp) protein (156aa)
Pyruvate-ferredoxin oxidoreductase beta-2 bin=GWC2_Chloroflexi_73_18 species=Metallosphaera sedula genus=Metallosphaera taxon_order=Sulfolobales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
thiamine pyrophosphate binding domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_50_b2_sep16_scaffold_2010_2
unknown

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943..1146
DNA (204bp) protein (68aa)

This feature has no annotations

PLM3-1_50_b2_sep16_scaffold_2010_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1232..2473)
DNA (1242bp) protein (414aa)
pyruvate ferredoxin oxidoreductase subunit alpha (EC:1.2.7.1)
Pyruvate ferredoxin oxidoreductase, alpha subunit bin=GWC2_Chloroflexi_73_18 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_50_b2_sep16_scaffold_2010_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2470..3669)
DNA (1200bp) protein (400aa)
Orf c01004 protein bin=GWC2_Chloroflexi_73_18 species=Metallosphaera sedula genus=Metallosphaera taxon_order=Sulfolobales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_50_b2_sep16_scaffold_2010_5
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3666..4406)
DNA (741bp) protein (247aa)
transcriptional regulator bin=bin7_NC10_sister species=Desulfosporosinus acidiphilus genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
GntR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_50_b2_sep16_scaffold_2010_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4544..5071)
DNA (528bp) protein (176aa)
hypothetical protein Tax=Brevibacillus sp. phR RepID=UPI000313AE9E
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_50_b2_sep16_scaffold_2010_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5313..6545)
DNA (1233bp) protein (411aa)
Putative oxidoreductase Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N5S8_ANATU
putative oxidoreductase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_50_b2_sep16_scaffold_2010_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6581..7516)
DNA (936bp) protein (312aa)
Aminocarboxymuconate-semialdehyde decarboxylase Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CSL1_PSEUX
amidohydrolase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_50_b2_sep16_scaffold_2010_9
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7599..8075)
DNA (477bp) protein (159aa)
ABC transporter, periplasmic substrate-binding protein, MCE family bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC transporter substrate-binding lipoprotein
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_50_b2_sep16_scaffold_2010_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8087..8833)
DNA (747bp) protein (249aa)
ABC transporter related protein bin=GWD2_Deltaproteobacteria_55_8 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC transporter-like protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_50_b2_sep16_scaffold_2010_11
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9018..9788)
DNA (771bp) protein (257aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
yrbE; putative toluene efflux ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_50_b2_sep16_scaffold_2010_12
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9941..10723
DNA (783bp) protein (261aa)
methyltransferase (EC:2.1.1.-)
Methyltransferase bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_50_b2_sep16_scaffold_2010_13
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10897..11370)
DNA (474bp) protein (158aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_50_b2_sep16_scaffold_2010_14
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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11597..11923
DNA (327bp) protein (109aa)
vitamin B12-dependent ribonucleotide reductase (EC:1.17.4.1)
Ribonucleotide reductase of class II (Coenzyme B12-dependent) bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Displaying 14 items

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