ggKbase home page

YM_S32_scaffold_0_chromo_pre_term.fasta

Search features with annotation key words

Displaying items 1501-1530 of 1578 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
YM_S32_scaffold_0_chromo_pre_term.fasta_1458
Candidatus Saccharimonas aalborgensis, Candidatus Saccharimonas, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(1371193..1373721)
DNA (2529bp) protein (843aa)
polA; DNA polymerase I (EC:2.7.7.7)
DNA polymerase {ECO:0000256|RuleBase:RU004460}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU004460};; species="Bacteria; Candidatus Saccharibacteria; Candidatus Saccharimonas.;" source="Candidatus Saccharimonas aalborgensis.;"
DNA polymerase Tax=Candidatus Saccharimonas aalborgensis RepID=R4PN03_9BACT
YM_S32_scaffold_0_chromo_pre_term.fasta_1459
Cellulomonas cellasea, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1373743..1375806)
DNA (2064bp) protein (688aa)
RNA polymerase sigma factor Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q582_CATAD
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas cellasea DSM 20118.;"
RpoD subfamily RNA polymerase sigma-70 subunit
YM_S32_scaffold_0_chromo_pre_term.fasta_1460
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1375903..1377123)
DNA (1221bp) protein (407aa)
RNA polymerase sigma factor SigA Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QCX2_CATAD
RNA polymerase sigma factor
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
YM_S32_scaffold_0_chromo_pre_term.fasta_1461
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

1377301..1380105
DNA (2805bp) protein (935aa)
Putative cation-transporting ATPase bin=GWC2_TM7_44_17 species=Gordonia amarae genus=Gordonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_TM7_44_17 organism_group=TM7 organism_desc=Genome has competed version
hypothetical protein
Tax=BJP_IG2103_TM7_39_1400
YM_S32_scaffold_0_chromo_pre_term.fasta_1462
unknown

Not on your lists

comp(1380119..1381210)
DNA (1092bp) protein (364aa)

This feature has no annotations

YM_S32_scaffold_0_chromo_pre_term.fasta_1463
R_RIF_OD1_09_49_22, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(1381207..1382037)
DNA (831bp) protein (277aa)
Peptidase M15D vanX D-ala-D-ala dipeptidase Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XQM8_HIRBI
peptidase M15D vanX D-ala-D-ala dipeptidase
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_09_49_22_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_1464
unknown

Not on your lists

comp(1382037..1383110)
DNA (1074bp) protein (358aa)

This feature has no annotations

YM_S32_scaffold_0_chromo_pre_term.fasta_1465
BJP_IG2103_TM7_39_1400, Candidatus Saccharibacteria, Bacteria

Not on your lists

1383233..1384030
DNA (798bp) protein (266aa)
Transcriptional regulator, TrmB Tax=sediment metagenome RepID=D9PL89_9ZZZZ bin=ACD51 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=ACD51 organism_group=PER (Peregrinibacteria) organism_desc=PER
Tax=BJP_IG2103_TM7_39_1400
YM_S32_scaffold_0_chromo_pre_term.fasta_1466
unknown

Not on your lists

comp(1383960..1385573)
DNA (1614bp) protein (538aa)

This feature has no annotations

YM_S32_scaffold_0_chromo_pre_term.fasta_1467
RifOxyA12_full_OD1_Moranbacteria_35_19_curated, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1385628..1386719)
DNA (1092bp) protein (364aa)
Putative geranylgeranyl pyrophosphate synthetase (GGPP synthetase) (GGPS) Tax=uncultured archaeon RepID=D1JFP7_9ARCH bin=ACD15 species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
geranylgeranyl pyrophosphate synthase
Tax=RifOxyA12_full_OD1_Moranbacteria_35_19_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_1468
RHI_Saccharibacteria_49_19, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(1386767..1387375)
DNA (609bp) protein (203aa)
Uncharacterized protein bin=GWC2_TM7_44_17 species=Thermococcus litoralis genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWC2_TM7_44_17 organism_group=TM7 organism_desc=Genome has competed version
Tax=RIFCSPHIGHO2_12_FULL_Saccharibacteria_49_19_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_1469
unknown

Not on your lists

comp(1387482..1388213)
DNA (732bp) protein (244aa)

This feature has no annotations

YM_S32_scaffold_0_chromo_pre_term.fasta_1470
unknown

Not on your lists

comp(1388305..1389078)
DNA (774bp) protein (258aa)

This feature has no annotations

YM_S32_scaffold_0_chromo_pre_term.fasta_1471
unknown

Not on your lists

comp(1389069..1389263)
DNA (195bp) protein (65aa)

This feature has no annotations

YM_S32_scaffold_0_chromo_pre_term.fasta_1472
R_Saccharibacteria_47_12, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(1389543..1390691)
DNA (1149bp) protein (383aa)
RNA polymerase sigma factor RpoD bin=GWC2_TM7_44_17 species=RAAC3_TM7 genus=RAAC3_TM7 taxon_order=RAAC3_TM7 taxon_class=RAAC3_TM7 phylum=TM7 tax=GWC2_TM7_44_17 organism_group=TM7 organism_desc=Genome has competed version
RNA polymerase sigma factor RpoD
Tax=RIFCSPHIGHO2_02_FULL_Saccharibacteria_47_12_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_1473
RHI_Saccharibacteria_49_19, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(1390684..1392441)
DNA (1758bp) protein (586aa)
DNA primase
id=5226313 bin=RAAC3_TM7 species=RAAC3_TM7 genus=RAAC3_TM7 taxon_order=RAAC3_TM7 taxon_class=RAAC3_TM7 phylum=TM7 tax=RAAC3_TM7 organism_group=TM7
Tax=RIFCSPHIGHO2_12_FULL_Saccharibacteria_49_19_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_1474
unknown

Not on your lists

1392557..1393198
DNA (642bp) protein (214aa)

This feature has no annotations

YM_S32_scaffold_0_chromo_pre_term.fasta_1475
RHI_Saccharibacteria_49_19, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(1393195..1393518)
DNA (324bp) protein (108aa)
Uncharacterized protein Tax=candidate division TM7 genomosp. GTL1 RepID=A5KRR9_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Saccharibacteria_49_19_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_1476
unknown

Not on your lists

comp(1393527..1393979)
DNA (453bp) protein (151aa)

This feature has no annotations

YM_S32_scaffold_0_chromo_pre_term.fasta_1477
unknown

Not on your lists

comp(1394048..1394536)
DNA (489bp) protein (163aa)

This feature has no annotations

YM_S32_scaffold_0_chromo_pre_term.fasta_1478
RHI_Saccharibacteria_41_12, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(1394564..1395115)
DNA (552bp) protein (184aa)
Oligoribonuclease Tax=candidate division TM7 genomosp. GTL1 RepID=A5KRR8_9BACT
oligoribonuclease
Tax=RIFCSPHIGHO2_12_FULL_Saccharibacteria_41_12_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_1479
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(1395126..1395512)
DNA (387bp) protein (129aa)
SelR-like methionine sulfoxide reductase; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] bin=ACD50 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=ACD50 organism_group=OP11 (Microgenomates) organism_desc=OP11
Peptide methionine sulfoxide reductase MsrB (EC:1.8.4.12)
Tax=CG_Pacearch_06
YM_S32_scaffold_0_chromo_pre_term.fasta_1480
GWC2_TM7_48_9, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(1395543..1396043)
DNA (501bp) protein (167aa)
Large-conductance mechanosensitive channel bin=GWC2_TM7_48_9 species=candidate division TM7 single-cell isolate TM7c genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWC2_TM7_48_9 organism_group=TM7 organism_desc=Good
Large-conductance mechanosensitive channel {ECO:0000313|EMBL:KKW02053.1}; species="Bacteria; Candidatus Saccharibacteria.;" source="Candidatus Saccharibacteria bacterium GW2011_GWC2_48_9.;"
Large-conductance mechanosensitive channel
YM_S32_scaffold_0_chromo_pre_term.fasta_1481
R_Saccharibacteria_47_12, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(1396484..1397212)
DNA (729bp) protein (243aa)
Uncharacterized protein Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QKZ9_SPILD
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Saccharibacteria_47_12_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_1482
RBG_13_Berkelbacteria_40_8_curated, Berkelbacteria, Bacteria

Not on your lists

comp(1397249..1398268)
DNA (1020bp) protein (340aa)
Histidine kinase bin=GWC2_CPR2_39_35 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWC2_CPR2_39_35 organism_group=CPR2 organism_desc=Candidate for curation
integral membrane sensor signal transduction histidine kinase
Tax=RBG_13_Berkelbacteria_40_8_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_1483
GWA2_OP11_40_7, Woesebacteria, Microgenomates, Bacteria

Not on your lists

comp(1398276..1398932)
DNA (657bp) protein (219aa)
Two component transcriptional regulator, winged helix family Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSR3_9BACT bin=ACD52 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=ACD52 organism_group=OP11 (Microgenomates) organism_desc=OP11
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:KKR71218.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWA2_40_7b.;"
two component transcriptional regulator, winged helix family protein
YM_S32_scaffold_0_chromo_pre_term.fasta_1484
unknown

Not on your lists

1399077..1400297
DNA (1221bp) protein (407aa)

This feature has no annotations

YM_S32_scaffold_0_chromo_pre_term.fasta_1485
Candidatus Saccharibacteria bacterium GW2011_GWA2_46_10, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(1400358..1401392)
DNA (1035bp) protein (345aa)
Bifunctional phosphoglucose/phosphomannose isomerase {ECO:0000313|EMBL:KKU20187.1}; species="Bacteria; Candidatus Saccharibacteria.;" source="Candidatus Saccharibacteria bacterium GW2011_GWA2_46_10.;"
bifunctional phosphoglucose/phosphomannose isomerase
id=5226278 bin=RAAC3_TM7 species=RAAC3_TM7 genus=RAAC3_TM7 taxon_order=RAAC3_TM7 taxon_class=RAAC3_TM7 phylum=TM7 tax=RAAC3_TM7 organism_group=TM7
YM_S32_scaffold_0_chromo_pre_term.fasta_1486
RHI_Saccharibacteria_47_16b, Candidatus Saccharibacteria, Bacteria

Not on your lists

1401471..1401974
DNA (504bp) protein (168aa)
hypothetical protein
bifunctional phosphoglucose/phosphomannose isomerase bin=GWC2_TM7_44_17 species=RAAC3_TM7 genus=RAAC3_TM7 taxon_order=RAAC3_TM7 taxon_class=RAAC3_TM7 phylum=TM7 tax=GWC2_TM7_44_17 organism_group=TM7 organism_desc=Genome has competed version
Tax=RIFCSPHIGHO2_12_FULL_Saccharibacteria_47_16b_curated
YM_S32_scaffold_0_chromo_pre_term.fasta_1487
RHI_Saccharibacteria_48_21, Candidatus Saccharibacteria, Bacteria

Not on your lists

1402004..1402579
DNA (576bp) protein (192aa)
Uncharacterized protein yhcS Tax=sediment metagenome RepID=D9PMP8_9ZZZZ
putative sortase family protein
Tax=RIFCSPHIGHO2_12_FULL_Saccharibacteria_48_21_curated
Displaying items 1501-1530 of 1578 in total

View Taxonomy