ggKbase home page

ACD28_56

Alias: ACD28_29900.10108.9

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD28_56_1

Not on your lists

1..108
DNA (108bp) protein (36aa)
restriction endonuclease subunit R
DEAD/DEAH box helicase-like protein (Fragment) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CAE6_9PLAN (db=UNIREF evalue=4.0e-10 bit_score=67.0 identity=80.0 coverage=94.4444444444444)
DEAD/DEAH box helicase-like protein {ECO:0000313|EMBL:EKD93256.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_56_2

Not on your lists

112..690
DNA (579bp) protein (193aa)
type I restriction-modification system, restriction subunit
Type I restriction-modification system, R subunit n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BJ37_9PROT (db=UNIREF evalue=4.0e-84 bit_score=313.0 identity=80.79 coverage=91.1917098445596)
seg (db=Seg db_id=seg from=178 to=192)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=12 to=153 evalue=1.5e-14)
ACD28_56_3

Not on your lists

886..1371
DNA (486bp) protein (162aa)
Type I restriction-modification system, R subunit n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BJ37_9PROT (db=UNIREF evalue=5.0e-41 bit_score=169.0 identity=57.72 coverage=90.7407407407407)
EcoEI R domain protein
coiled-coil (db=Coil db_id=coil from=74 to=95 evalue=NA)
EcoEI_R_C (db=HMMPfam db_id=PF08463 from=6 to=152 evalue=7.0e-36 interpro_id=IPR013670 interpro_description=Restriction endonuclease, type I, EcoEI, R subunit/Type III, Res subunit, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: catalytic activity (GO:0003824), Biological Process: DNA modification (GO:0006304))
ACD28_56_4

Not on your lists

1408..1845
DNA (438bp) protein (146aa)
1408..1845 + (rbs_motif=TAA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD93259.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_56_5

Not on your lists

1960..2217
DNA (258bp) protein (86aa)
1960..2217 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD93260.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_56_6

Not on your lists

2251..2346
DNA (96bp) protein (32aa)
2251..2346 + (rbs_motif=TAA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD93261.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_56_7

Not on your lists

comp(2809..3189)
DNA (381bp) protein (127aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
Uncharacterized protein {ECO:0000313|EMBL:EKD93262.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_56_8

Not on your lists

3805..4080
DNA (276bp) protein (92aa)
hypothetical protein
hypothetical protein alias=ACD28_29900.10108.9G0008,ACD28_29900.10108.9_8,ACD28_C00056G00008 id=31407 tax=ACD28 species=Methanocella paludicola genus=Methanocella taxon_order=Methanocellales taxon_class=Methanomicrobia phylum=Euryarchaeota organism_group=PER organism_desc=PER
Uncharacterized protein {ECO:0000313|EMBL:EKD93263.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_56_9

Not on your lists

4333..4464
DNA (132bp) protein (44aa)
4333..4464 + (rbs_motif=TAA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD93264.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_56_10

Not on your lists

4912..5316
DNA (405bp) protein (135aa)
hypothetical protein
DUF511 (db=HMMPfam db_id=PF04373 from=1 to=117 evalue=4.7e-52 interpro_id=IPR007468 interpro_description=Protein of unknown function DUF511)
Uncharacterized protein {ECO:0000313|EMBL:EKD93265.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein; K09805 hypothetical protein alias=ACD28_29900.10108.9G0010,ACD28_29900.10108.9_10,ACD28_C00056G00010 id=31403 tax=ACD28 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria organism_group=PER organism_desc=PER
ACD28_56_11

Not on your lists

7235..7369
DNA (135bp) protein (45aa)
7235..7369 + (rbs_motif=TAA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD93266.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_56_12

Not on your lists

7448..7642
DNA (195bp) protein (65aa)
7448..7642 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD93267.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_56_13

Not on your lists

8496..9044
DNA (549bp) protein (183aa)
cisA; putative DNA recombinase CisA
RECOMBINASES_1 (db=PatternScan db_id=PS00397 from=21 to=29 evalue=0.0 interpro_id=IPR006118 interpro_description=Recombinase, conserved site GO=Molecular Function: recombinase activity (GO:0000150), Biological Process: DNA recombination (GO:0006310))
no description (db=HMMSmart db_id=SM00857 from=18 to=181 evalue=3.2e-28 interpro_id=IPR006119 interpro_description=Resolvase, N-terminal GO=Molecular Function: recombinase activity (GO:0000150), Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310))
Resolvase-like (db=superfamily db_id=SSF53041 from=16 to=182 evalue=2.3e-20 interpro_id=IPR006119 interpro_description=Resolvase, N-terminal GO=Molecular Function: recombinase activity (GO:0000150), Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310))
ACD28_56_14

Not on your lists

9186..10130
DNA (945bp) protein (315aa)
resolvase
seg (db=Seg db_id=seg from=224 to=239)
seg (db=Seg db_id=seg from=137 to=155)
coiled-coil (db=Coil db_id=coil from=182 to=203 evalue=NA)
Displaying 14 items

View Taxonomy