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ACD28_58

Alias: ACD28_51877.57689.12

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Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD28_58_1

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3..560
DNA (558bp) protein (186aa)
seg (db=Seg db_id=seg from=169 to=183)
seg (db=Seg db_id=seg from=129 to=143)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=44)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=86)
ACD28_58_2

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787..1353
DNA (567bp) protein (189aa)
tsf; elongation factor Ts
Translation elongation factor Ts n=1 Tax=Bermanella marisrubri RepID=Q1N1X3_9GAMM (db=UNIREF evalue=3.0e-34 bit_score=147.0 identity=41.88 coverage=96.8253968253968)
EF_TS (db=HMMPfam db_id=PF00889 from=2 to=185 evalue=2.8e-49 interpro_id=IPR014039 interpro_description=Translation elongation factor EFTs/EF1B, dimerisation GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
Elongation factor Ts (EF-Ts), dimerisation domain (db=superfamily db_id=SSF54713 from=69 to=186 evalue=3.4e-36 interpro_id=IPR014039 interpro_description=Translation elongation factor EFTs/EF1B, dimerisation GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
ACD28_58_3
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

1389..2618
DNA (1230bp) protein (410aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase
3,4-dihydroxy-2-butanone 4-phosphate synthase
Riboflavin biosynthesis protein RibA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHZ1_THEYD (db=UNIREF evalue=3.0e-127 bit_score=458.0 identity=60.0 coverage=97.0731707317073)
seg (db=Seg db_id=seg from=22 to=35)
ACD28_58_4

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2629..3720
DNA (1092bp) protein (364aa)
riboflavin biosynthesis protein RibD (EC:1.1.1.193 3.5.4.26)
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=55 to=96 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
CYTOSINE DEAMINASE (db=HMMPanther db_id=PTHR11079 from=7 to=315 evalue=2.9e-73)
RIBOFLAVIN-SPECIFIC DEAMINASE (db=HMMPanther db_id=PTHR11079:SF10 from=7 to=315 evalue=2.9e-73 interpro_id=IPR004794 interpro_description=Riboflavin biosynthesis protein RibD GO=Molecular Function: 5-amino-6-(5-phosphoribosylamino)uracil reductase activity (GO:0008703), Molecular Function: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity (GO:0008835), Biological Process: riboflavin biosynthetic process (GO:0009231), Biological Process: oxidation reduction (GO:0055114))
ACD28_58_5
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

3777..4409
DNA (633bp) protein (211aa)
3777..4409 + (rbs_motif=TAA rbs_spacer=12bp)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_58_6
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

4469..6982
DNA (2514bp) protein (838aa)
ATP/ADP translocase-like protein
Putative uncharacterized protein n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZHQ4_NODSP (db=UNIREF evalue=7.0e-11 bit_score=73.6 identity=24.62 coverage=28.7589498806683)
seg (db=Seg db_id=seg from=347 to=372)
seg (db=Seg db_id=seg from=436 to=452)
ACD28_58_7
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

6966..8165
DNA (1200bp) protein (400aa)
HAMP domain-containing protein,cache domain-containing protein
seg (db=Seg db_id=seg from=15 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
ACD28_58_8

Not on your lists

8240..9250
DNA (1011bp) protein (337aa)
S-adenosylmethionine--tRNA ribosyltransferase-isomerase
S-adenosylmethionine--tRNA ribosyltransferase-isomerase
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=5 Tax=Veillonella RepID=D1BLM0_VEIPT (db=UNIREF evalue=2.0e-93 bit_score=345.0 identity=53.08 coverage=99.1097922848665)
queA: S-adenosylmethionine:tRNA ribosyltrans (db=HMMTigr db_id=TIGR00113 from=1 to=336 evalue=1.3e-144 interpro_id=IPR003699 interpro_description=Queuosine biosynthesis protein GO=Biological Process: queuosine biosynthetic process (GO:0008616), Molecular Function: transferase activity (GO:0016740), Molecular Function: isomerase activity (GO:0016853))
ACD28_58_9

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9357..11621
DNA (2265bp) protein (755aa)
hypothetical protein
seg (db=Seg db_id=seg from=352 to=370)
seg (db=Seg db_id=seg from=5 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
ACD28_58_10

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11669..11944
DNA (276bp) protein (92aa)
putative YGGT family
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=67 to=89)
YGGT (db=HMMPfam db_id=PF02325 from=13 to=85 evalue=7.8e-20 interpro_id=IPR003425 interpro_description=Protein of unknown function YGGT GO=Cellular Component: membrane (GO:0016020))
ACD28_58_11

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12127..13539
DNA (1413bp) protein (471aa)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteinyl-tRNA synthetase n=1 Tax=Deferribacter desulfuricans SSM1 RepID=D3PCJ1_DEFDS (db=UNIREF evalue=2.0e-130 bit_score=469.0 identity=49.58 coverage=98.5138004246285)
cysS: cysteinyl-tRNA synthetase (db=HMMTigr db_id=TIGR00435 from=3 to=467 evalue=7.4e-193 interpro_id=IPR002308 interpro_description=Cysteinyl-tRNA synthetase, class Ia GO=Molecular Function: cysteine-tRNA ligase activity (GO:0004817), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: cysteinyl-tRNA aminoacylation (GO:0006423))
ACD28_58_12
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(13536..14837)
DNA (1302bp) protein (434aa)
UDP-N-acetylmuramate--alanine ligase
UDP-N-acetylmuramate--alanine ligase
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Clostridium acetobutylicum RepID=MURC_CLOAB (db=UNIREF evalue=3.0e-87 bit_score=326.0 identity=40.0 coverage=98.8479262672811)
seg (db=Seg db_id=seg from=118 to=131)
ACD28_58_13
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

14948..15367
DNA (420bp) protein (140aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
coiled-coil (db=Coil db_id=coil from=46 to=67 evalue=NA)
DivIC (db=HMMPfam db_id=PF04977 from=22 to=95 evalue=5.5e-12 interpro_id=IPR007060 interpro_description=Septum formation initiator GO=Biological Process: cell cycle (GO:0007049))
Septum formation initiator Tax=GWA2_PER_44_7
ACD28_58_14
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(15705..17537)
DNA (1833bp) protein (611aa)
seg (db=Seg db_id=seg from=522 to=533)
coiled-coil (db=Coil db_id=coil from=378 to=413 evalue=NA)
coiled-coil (db=Coil db_id=coil from=26 to=51 evalue=NA)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_58_15
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(17539..17727)
DNA (189bp) protein (63aa)
seg (db=Seg db_id=seg from=31 to=59)
seg (db=Seg db_id=seg from=3 to=14)
coiled-coil (db=Coil db_id=coil from=27 to=57 evalue=NA)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_58_16

Not on your lists

comp(17741..19036)
DNA (1296bp) protein (432aa)
cell envelope-related transcriptional attenuator
transmembrane_regions (db=TMHMM db_id=tmhmm from=51 to=70)
seg (db=Seg db_id=seg from=417 to=429)
coiled-coil (db=Coil db_id=coil from=106 to=127 evalue=NA)
ACD28_58_17

Not on your lists

19268..19555
DNA (288bp) protein (96aa)
seg (db=Seg db_id=seg from=57 to=63)
Uncharacterized protein {ECO:0000313|EMBL:EKD92841.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_58_18

Not on your lists

19650..19856
DNA (207bp) protein (69aa)
seg (db=Seg db_id=seg from=26 to=39)
Uncharacterized protein {ECO:0000313|EMBL:EKD92842.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD28_58_19

Not on your lists

19868..20731
DNA (864bp) protein (288aa)
protein-(glutamine-N5) methyltransferase
seg (db=Seg db_id=seg from=209 to=221)
RF_mod_PrmC: protein-(glutamine-N5) methy (db=HMMTigr db_id=TIGR03534 from=21 to=278 evalue=8.1e-70 interpro_id=IPR019874 interpro_description=Protein-(glutamine-N5) methyltransferase, release factor-specific)
hemK_fam: methyltransferase, HemK family (db=HMMTigr db_id=TIGR00536 from=1 to=285 evalue=1.4e-53 interpro_id=IPR004556 interpro_description=Modification methylase HemK GO=Biological Process: protein amino acid methylation (GO:0006479), Molecular Function: protein methyltransferase activity (GO:0008276))
ACD28_58_20

Not on your lists

20740..21804
DNA (1065bp) protein (355aa)
peptide chain release factor 1
peptide chain release factor 1
Peptide chain release factor 1 n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCP5_THET1 (db=UNIREF evalue=3.0e-108 bit_score=395.0 identity=57.55 coverage=98.3098591549296)
coiled-coil (db=Coil db_id=coil from=74 to=95 evalue=NA)
ACD28_58_21

Not on your lists

comp(22076..23593)
DNA (1518bp) protein (506aa)
L-aspartate oxidase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI88_RHOM4 (db=UNIREF evalue=2.0e-105 bit_score=386.0 identity=42.48 coverage=98.4189723320158)
L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase (EC:1.4.3.16)
coiled-coil (db=Coil db_id=coil from=435 to=463 evalue=NA)
ACD28_58_22
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(23583..24107)
DNA (525bp) protein (175aa)
shikimate kinase (EC:2.7.1.71)
seg (db=Seg db_id=seg from=57 to=68)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=2 to=165 evalue=4.2e-38)
SKI (db=HMMPfam db_id=PF01202 from=9 to=154 evalue=1.2e-36 interpro_id=IPR000623 interpro_description=Shikimate kinase GO=Molecular Function: shikimate kinase activity (GO:0004765), Molecular Function: ATP binding (GO:0005524))
ACD28_58_23
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(24117..25259)
DNA (1143bp) protein (381aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=323 to=345)
transmembrane_regions (db=TMHMM db_id=tmhmm from=355 to=377)
seg (db=Seg db_id=seg from=51 to=64)
seg (db=Seg db_id=seg from=93 to=111)
ACD28_58_24
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(25246..26520)
DNA (1275bp) protein (425aa)
3-phosphoshikimate 1-carboxyvinyltransferase
3-phosphoshikimate 1-carboxyvinyltransferase
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FFQ4_DESAA (db=UNIREF evalue=5.0e-85 bit_score=318.0 identity=43.73 coverage=94.1176470588235)
seg (db=Seg db_id=seg from=160 to=169)
ACD28_58_25

Not on your lists

comp(26548..27654)
DNA (1107bp) protein (369aa)
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NJ94_9DELT (db=UNIREF evalue=1.0e-70 bit_score=270.0 identity=41.81 coverage=95.3929539295393)
transmembrane_regions (db=TMHMM db_id=tmhmm from=101 to=123)
seg (db=Seg db_id=seg from=103 to=116)
ACD28_58_26

Not on your lists

comp(27848..30505)
DNA (2658bp) protein (886aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS42_9BACT (db=UNIREF evalue=1.0e-126 bit_score=458.0 identity=34.36 coverage=90.1805869074492)
seg (db=Seg db_id=seg from=871 to=885)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
ACD28_58_27

Not on your lists

comp(30640..32025)
DNA (1386bp) protein (462aa)
Glycyl-tRNA synthetase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=SYG_THERP (db=UNIREF evalue=1.0e-160 bit_score=570.0 identity=58.9 coverage=97.8354978354978)
glyS; glycyl-tRNA synthetase (EC:6.1.1.14)
glyS; glycyl-tRNA synthetase (EC:6.1.1.14)
glyS_dimeric: glycyl-tRNA synthetase (db=HMMTigr db_id=TIGR00389 from=7 to=460 evalue=9.4e-202 interpro_id=IPR002315 interpro_description=Glycyl-tRNA synthetase, alpha2 dimer GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: glycine-tRNA ligase activity (GO:0004820), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: glycyl-tRNA aminoacylation (GO:0006426))
ACD28_58_28

Not on your lists

32248..33252
DNA (1005bp) protein (335aa)
ansA; asparaginase
seg (db=Seg db_id=seg from=96 to=107)
no description (db=HMMSmart db_id=SM00870 from=5 to=317 evalue=2.1e-99 interpro_id=IPR006034 interpro_description=Asparaginase/glutaminase GO=Biological Process: cellular amino acid metabolic process (GO:0006520))
Glutaminase/Asparaginase (db=superfamily db_id=SSF53774 from=1 to=329 evalue=5.5e-98 interpro_id=IPR006034 interpro_description=Asparaginase/glutaminase GO=Biological Process: cellular amino acid metabolic process (GO:0006520))
ACD28_58_29
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(33323..33619)
DNA (297bp) protein (99aa)
DUF3467 (db=HMMPfam db_id=PF11950 from=7 to=95 evalue=1.6e-12 interpro_id=IPR021857 interpro_description=Protein of unknown function DUF3467)
hypothetical protein Tax=GWA2_PER_44_7
ACD28_58_30
GWA2_PER_44_7, Peregrinibacteria, Bacteria

Not on your lists

comp(33718..34485)
DNA (768bp) protein (256aa)
TrmB (db=HMMPfam db_id=PF01978 from=16 to=81 evalue=1.2e-14 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=2 to=101 evalue=4.1e-07)
Transcriptional regulator, TrmB Tax=GWA2_PER_44_7
Transcriptional regulator, TrmB
Displaying items 1-30 of 48 in total

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