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ACD37_175

Alias: ACD37_63286.3777.6

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD37_175_1

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2..139
DNA (138bp) protein (46aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
SecE (db=HMMPfam db_id=PF00584 from=1 to=42 evalue=4.5e-13 interpro_id=IPR001901 interpro_description=Protein secE/sec61-gamma protein GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
secE_bact: preprotein translocase, SecE sub (db=HMMTigr db_id=TIGR00964 from=1 to=44 evalue=0.00098 interpro_id=IPR005807 interpro_description=SecE subunit of protein translocation complex GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
Uncharacterized protein {ECO:0000313|EMBL:EKD85819.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD37_175_2

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147..251
DNA (105bp) protein (35aa)
seg (db=Seg db_id=seg from=14 to=27)
Uncharacterized protein {ECO:0000313|EMBL:EKD85820.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD37_175_3

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299..1093
DNA (795bp) protein (265aa)
transcription antitermination protein nusG
NUSG (db=PatternScan db_id=PS01014 from=247 to=256 evalue=0.0 interpro_id=IPR015869 interpro_description=Transcription antitermination protein, NusG, bacteria, conserved site)
nusG: transcription termination/antiterminat (db=HMMTigr db_id=TIGR00922 from=95 to=264 evalue=8.2e-84 interpro_id=IPR001062 interpro_description=Transcription antitermination protein, NusG GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00738 from=92 to=200 evalue=2.0e-47 interpro_id=IPR006645 interpro_description=Transcription antitermination protein, NusG, N-terminal GO=Molecular Function: transcription elongation regulator activity (GO:0003711), Biological Process: positive regulation of RNA elongation from RNA polymerase II promoter (GO:0032968))
ACD37_175_4

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1180..1599
DNA (420bp) protein (140aa)
rplK; 50S ribosomal protein L11
seg (db=Seg db_id=seg from=2 to=30)
RIBOSOMAL_L11 (db=PatternScan db_id=PS00359 from=125 to=139 evalue=0.0 interpro_id=IPR020785 interpro_description=Ribosomal protein L11, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L11_bact: ribosomal protein L11 (db=HMMTigr db_id=TIGR01632 from=3 to=139 evalue=1.3e-67 interpro_id=IPR006519 interpro_description=Ribosomal protein L11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD37_175_5

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1908..2603
DNA (696bp) protein (232aa)
50S ribosomal protein L1
50S ribosomal protein L1 n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R0U3_9RHOB (db=UNIREF evalue=8.0e-37 bit_score=157.0 identity=39.15 coverage=77.1551724137931)
seg (db=Seg db_id=seg from=28 to=43)
RIBOSOMAL_L1 (db=PatternScan db_id=PS01199 from=133 to=151 evalue=0.0 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
ACD37_175_6
GWA2_OP11_43_10, Beckwithbacteria, Microgenomates, Bacteria

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2656..3636
DNA (981bp) protein (327aa)
glycoside hydrolase family protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=275 to=290)
seg (db=Seg db_id=seg from=4 to=17)
putative plant related degradation, family 26 kelly wrighton (11/15/12)
ACD37_175_7

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3633..3809
DNA (177bp) protein (59aa)
seg (db=Seg db_id=seg from=46 to=59)
Uncharacterized protein {ECO:0000313|EMBL:EKD85817.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 7 items

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