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ACD37_232

Alias: ACD37_26558.6069.18

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD37_232_1
unknown

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comp(2..70)
DNA (69bp) protein (23aa)
2..70 - (rbs_motif=TAA rbs_spacer=3bp)
ACD37_232_2

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comp(84..464)
DNA (381bp) protein (127aa)
50S ribosomal protein L14
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=5 to=126 evalue=6.1e-73 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
50S RIBOSOMAL PROTEIN L14 (db=HMMPanther db_id=PTHR11761:SF3 from=5 to=126 evalue=2.5e-60 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
50S/60S RIBOSOMAL PROTEIN L14/L23 (db=HMMPanther db_id=PTHR11761 from=5 to=126 evalue=2.5e-60 interpro_id=IPR000218 interpro_description=Ribosomal protein L14b/L23e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD37_232_3

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comp(475..753)
DNA (279bp) protein (93aa)
rpsQ; 30S ribosomal protein S17
RIBOSOMAL_S17 (db=PatternScan db_id=PS00056 from=63 to=75 evalue=0.0 interpro_id=IPR019979 interpro_description=Ribosomal protein S17, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S17_bact: 30S ribosomal protein S17 (db=HMMTigr db_id=TIGR03635 from=12 to=83 evalue=1.1e-42 interpro_id=IPR019984 interpro_description=Ribosomal protein S17, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER (db=HMMPanther db_id=PTHR10744 from=14 to=80 evalue=8.0e-30 interpro_id=IPR000266 interpro_description=Ribosomal protein S17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD37_232_4

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comp(890..1099)
DNA (210bp) protein (70aa)
Ribosomal_L29 (db=HMMPfam db_id=PF00831 from=2 to=58 evalue=1.4e-15 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L29: ribosomal protein L29 (db=HMMTigr db_id=TIGR00012 from=3 to=58 evalue=1.0e-10 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L29 (L29p) (db=superfamily db_id=SSF46561 from=1 to=60 evalue=3.3e-10 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:1.10.287.310 from=1 to=65 evalue=4.3e-06 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD37_232_5

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comp(1114..1527)
DNA (414bp) protein (138aa)
rplP; 50S ribosomal protein L16
RIBOSOMAL_L16_2 (db=PatternScan db_id=PS00701 from=83 to=94 evalue=0.0 interpro_id=IPR020798 interpro_description=Ribosomal protein L16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL_L16_1 (db=PatternScan db_id=PS00586 from=60 to=71 evalue=0.0 interpro_id=IPR020798 interpro_description=Ribosomal protein L16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplP_bact: ribosomal protein L16 (db=HMMTigr db_id=TIGR01164 from=3 to=128 evalue=4.4e-77 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD37_232_6

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comp(1531..2187)
DNA (657bp) protein (219aa)
rpsC; 30S ribosomal protein S3
seg (db=Seg db_id=seg from=100 to=115)
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=167 to=201 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsC_bact: ribosomal protein S3 (db=HMMTigr db_id=TIGR01009 from=1 to=215 evalue=5.0e-116 interpro_id=IPR005704 interpro_description=Ribosomal protein S3, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD37_232_7

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comp(2217..2648)
DNA (432bp) protein (144aa)
rplV; 50S ribosomal protein L22
seg (db=Seg db_id=seg from=105 to=141)
RIBOSOMAL_L22 (db=PatternScan db_id=PS00464 from=83 to=107 evalue=0.0 interpro_id=IPR018260 interpro_description=Ribosomal protein L22/L17, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplV_bact: ribosomal protein L22 (db=HMMTigr db_id=TIGR01044 from=5 to=107 evalue=1.2e-41 interpro_id=IPR005727 interpro_description=Ribosomal protein L22, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
ACD37_232_8

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comp(2675..4237)
DNA (1563bp) protein (521aa)
surface antigen (D15)
Surface antigen (D15) n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJ97_9BACT (db=UNIREF evalue=2.0e-11 bit_score=74.3 identity=31.36 coverage=31.2859884836852)
coiled-coil (db=Coil db_id=coil from=303 to=345 evalue=NA)
coiled-coil (db=Coil db_id=coil from=268 to=300 evalue=NA)
ACD37_232_9

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comp(4237..4521)
DNA (285bp) protein (95aa)
rpsS; 30S ribosomal protein S19
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=91 evalue=6.5e-55 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
RIBOSOMAL PROTEIN S19P FAMILY MEMBER (db=HMMPanther db_id=PTHR11880 from=1 to=90 evalue=1.7e-38 interpro_id=IPR002222 interpro_description=Ribosomal protein S19/S15 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD37_232_10

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comp(4539..5363)
DNA (825bp) protein (275aa)
50S ribosomal protein L2
seg (db=Seg db_id=seg from=233 to=245)
seg (db=Seg db_id=seg from=28 to=41)
RIBOSOMAL_L2 (db=PatternScan db_id=PS00467 from=218 to=229 evalue=0.0 interpro_id=IPR022671 interpro_description=Ribosomal protein L2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD37_232_11

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comp(5385..5672)
DNA (288bp) protein (96aa)
50S ribosomal protein L23
Ribosomal_L23 (db=HMMPfam db_id=PF00276 from=4 to=94 evalue=5.4e-25 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal proteins S24e, L23 and L15e (db=superfamily db_id=SSF54189 from=1 to=94 evalue=8.0e-25 interpro_id=IPR012678 interpro_description=Ribosomal protein L23/L15e, core GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=2 to=94 evalue=1.4e-24 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
ACD37_232_12

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comp(5702..6109)
DNA (408bp) protein (136aa)
50S ribosomal protein L4/L1e
50S ribosomal protein L4 n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q137_9BACT (db=UNIREF evalue=7.0e-21 bit_score=102.0 identity=42.74 coverage=90.4411764705882)
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=1 to=132 evalue=7.3e-35 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L4 (db=HMMPfam db_id=PF00573 from=1 to=130 evalue=1.2e-34 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 12 items

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