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sw_4_scaffold_1553

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_1553_1
R_OD1_Falkowbacteria_40_23, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2..448)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI00037B39A9
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Falkowbacteria_40_23_curated
hypothetical protein
sw_4_scaffold_1553_2
CG_CPR01_01, CG_CPR01, Bacteria

Not on your lists

comp(838..1179)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Pleurocapsa sp. PCC 7319 RepID=UPI000347BBE4
GCN5-like N-acetyltransferase Tax=CG_CPR01_01
GCN5-like N-acetyltransferase
sw_4_scaffold_1553_3
GWA1_OD1_Jorgensenbacteria_54_12_curated, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1240..1539)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Frankia sp. BMG5.12 RepID=UPI000370D6E1
hypothetical protein Tax=GWA1_OD1_Jorgensenbacteria_54_12_curated
hypothetical protein
sw_4_scaffold_1553_4
R_OD1_Giovannonibacteria_44_16, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(1539..2276)
DNA (738bp) protein (246aa)
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_01_FULL_OD1_Giovannonibacteria_44_16_curated
cth:Cthe_0895 RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor id=136559 bin=ACD8 species=ACD8 genus=ACD8 taxon_order=ACD8 taxon_class=ACD8 phylum=OD1-i tax=ACD8 organism_group=OD1-i organism_desc=OD1-i
RNA polymerase, sigma 70 subunit, RpoD
sw_4_scaffold_1553_5
unknown

Not on your lists

comp(2401..2586)
DNA (186bp) protein (62aa)

This feature has no annotations

sw_4_scaffold_1553_6
RBG_13_RIF_OD1_08_41_18_curated, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(2596..4377)
DNA (1782bp) protein (594aa)
dnaG; DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RBG_13_RIF_OD1_08_41_18_curated
DNA primase n=1 Tax=uncultured bacterium RepID=K2DC16_9BACT
DNA primase
sw_4_scaffold_1553_7
CG_CPR02_01, CG_CPR02, Bacteria

Not on your lists

comp(4766..5038)
DNA (273bp) protein (91aa)
hypothetical protein
4Fe-4S ferredoxins Tax=CG_CPR02_01
4Fe-4S ferredoxin, iron-sulpur binding domain id=5801906 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
sw_4_scaffold_1553_8

Not on your lists

comp(5048..5332)
DNA (285bp) protein (95aa)
Nitrogen fixation protein NifU n=1 Tax=Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 RepID=S6LMX2_VIBNA
Nitrogen-fixing NifU domain protein {ECO:0000313|EMBL:KKQ55947.1}; TaxID=1618780 species="Bacteria; Parcubacteria.;" source="Parcubacteria (OD1-vii) bacterium GW2011_GWA2_38_13b.;"
nitrogen fixation protein
sw_4_scaffold_1553_9
RIFOXYA2_FULL_OD1_Falkowbacteria_38_12_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists


comp(5465..5770)
DNA (306bp) protein (102aa)
50S ribosomal protein L21 n=2 Tax=Alcanivorax RepID=K0CJQ6_ALCDB
rplU; 50S ribosomal protein L21
rplU; 50S ribosomal protein L21 Tax=RIFOXYA2_FULL_OD1_Falkowbacteria_38_12_curated
sw_4_scaffold_1553_10
Bacillus cellulosilyticus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5873..6784
DNA (912bp) protein (304aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate
tRNA dimethylallyltransferase n=1 Tax=Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4) RepID=E6TS16_BACCJ
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase
sw_4_scaffold_1553_11
GWE1_OD1_ACD7_35_17, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(6776..7294)
DNA (519bp) protein (173aa)
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8); K01809 mannose-6-phosphate isomerase [EC:5.3.1.8]; K01810 glucose-6-phosphate isomerase [EC:5.3.1.9] id=131361 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
Bifunctional phosphoglucose/phosphomannose isomerase {ECO:0000313|EMBL:KKP68022.1}; TaxID=1618707 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWE1_35_17.
bifunctional phosphoglucose/phosphomannose isomerase
sw_4_scaffold_1553_12
GWE1_OD1_38_31, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(7236..7727)
DNA (492bp) protein (164aa)
Bifunctional phosphoglucose/phosphomannose isomerase id=1899176 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
Bifunctional phosphoglucose/phosphomannose isomerase {ECO:0000313|EMBL:KKQ71184.1}; TaxID=1618638 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Falkowbacteria) bacterium GW2011_GWE1_38_31
bifunctional phosphoglucose/phosphomannose isomerase
sw_4_scaffold_1553_13
CG_Moran_01, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

7880..8191
DNA (312bp) protein (104aa)
RNA-binding protein (Contains KH domain)-like protein (Fragment) n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSZ2_9BACT id=16886 bin=ACD1 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein Tax=CG_Moran_01
hypothetical protein
sw_4_scaffold_1553_14
R_RIF_OD1_04_46_36, RIF-OD1-4, Parcubacteria, Bacteria

Not on your lists

8209..8901
DNA (693bp) protein (231aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine-N1-)-methyltransferase [EC:2.1.1.31] id=9181 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
tRNA (guanine-N1)-methyltransferase Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_04_46_36_curated
trmD; tRNA (guanine-N(1)-)-methyltransferase
sw_4_scaffold_1553_15
GWF2_OD1_35_39, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

8906..9463
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FPD1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKP79974.1}; TaxID=1618721 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWF2_35_39.;"
sw_4_scaffold_1553_trna_1
unknown

Not on your lists

9465..9538
DNA (74bp)
transferRNA
sw_4_scaffold_1553_16
GWA1_OD1_39_13_partial, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

9587..11689
DNA (2103bp) protein (701aa)
ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase {ECO:0000313|EMBL:KKR02667.1}; TaxID=1619019 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA1_39_13.;"
ATP-dependent DNA helicase RecG id=3736516 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
sw_4_scaffold_1553_17
RLO_OD1_Moranbacteria_48_12, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(11958..13238)
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EM29_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Moranbacteria_48_12_curated
hypothetical protein
sw_4_scaffold_1553_18
BJP_08E140C01_OD1_43_7, Parcubacteria, Bacteria

Not on your lists

comp(13228..14391)
DNA (1164bp) protein (388aa)
glycosyl transferase, group 1 id=8446 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
group 1 glycosyl transferase
Tax=BJP_08E140C01_OD1_43_7
sw_4_scaffold_1553_19
Candidatus Saccharibacteria bacterium GW2011_GWA2_46_10, Candidatus Saccharibacteria, Bacteria

Not on your lists

comp(14521..14988)
DNA (468bp) protein (156aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU20063.1}; TaxID=1619069 species="Bacteria; Candidatus Saccharibacteria.;" source="Candidatus Saccharibacteria bacterium GW2011_GWA2_46_10.;"
transmembrane_regions 12..34 id=14424055 bin=bin11_novelCP species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=bin11_novelCP organism_group=Unknown_CP
Displaying 20 items

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