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ACD43_56

Alias: ACD43_382757.5709.7

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD43_56_1

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2..205
DNA (204bp) protein (68aa)
6,7-dimethyl-8-ribityllumazine synthase
DMRL_synthase (db=HMMPfam db_id=PF00885 from=1 to=66 evalue=5.5e-11 interpro_id=IPR002180 interpro_description=6,7-dimethyl-8-ribityllumazine synthase GO=Biological Process: riboflavin biosynthetic process (GO:0009231), Cellular Component: riboflavin synthase complex (GO:0009349))
Lumazine synthase (db=superfamily db_id=SSF52121 from=1 to=66 evalue=1.2e-09 interpro_id=IPR002180 interpro_description=6,7-dimethyl-8-ribityllumazine synthase GO=Biological Process: riboflavin biosynthetic process (GO:0009231), Cellular Component: riboflavin synthase complex (GO:0009349))
no description (db=Gene3D db_id=G3DSA:3.40.50.960 from=1 to=66 evalue=8.4e-05 interpro_id=IPR002180 interpro_description=6,7-dimethyl-8-ribityllumazine synthase GO=Biological Process: riboflavin biosynthetic process (GO:0009231), Cellular Component: riboflavin synthase complex (GO:0009349))
ACD43_56_2

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comp(185..415)
DNA (231bp) protein (77aa)
50S ribosomal protein L28
Ribosomal_L28 (db=HMMPfam db_id=PF00830 from=3 to=61 evalue=9.1e-19 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L28p-like (db=superfamily db_id=SSF143800 from=1 to=73 evalue=4.7e-18)
L28: ribosomal protein L28 (db=HMMTigr db_id=TIGR00009 from=1 to=58 evalue=8.3e-16 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD43_56_3

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443..973
DNA (531bp) protein (177aa)
tRNA/rRNA methyltransferase SpoU
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI72_RHOM4 (db=UNIREF evalue=1.0e-29 bit_score=132.0 identity=45.65 coverage=76.8361581920904)
seg (db=Seg db_id=seg from=157 to=175)
alpha/beta knot (db=superfamily db_id=SSF75217 from=7 to=173 evalue=2.7e-36)
ACD43_56_4

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comp(987..1478)
DNA (492bp) protein (164aa)
987..1478 - (rbs_motif=ATA rbs_spacer=5bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD76177.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_56_5

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1872..1997
DNA (126bp) protein (42aa)
1872..1997 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD76170.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_56_6

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2007..2750
DNA (744bp) protein (248aa)
FeS assembly ATPase SufC
seg (db=Seg db_id=seg from=158 to=171)
sufC: FeS assembly ATPase SufC (db=HMMTigr db_id=TIGR01978 from=8 to=247 evalue=5.9e-132 interpro_id=IPR010230 interpro_description=ATPase SufC, SUF system FeS cluster assembly GO=Molecular Function: ATP binding (GO:0005524), Biological Process: transport (GO:0006810))
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF6 from=8 to=239 evalue=2.2e-100 interpro_id=IPR010230 interpro_description=ATPase SufC, SUF system FeS cluster assembly GO=Molecular Function: ATP binding (GO:0005524), Biological Process: transport (GO:0006810))
ACD43_56_7

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2747..4180
DNA (1434bp) protein (478aa)
FeS assembly protein SufB n=8 Tax=Thermoanaerobacter RepID=B0K560_THEPX (db=UNIREF evalue=2.0e-162 bit_score=576.0 identity=58.46 coverage=94.7698744769875)
FeS assembly protein SufB
FeS assembly protein SufB
sufB: FeS assembly protein SufB (db=HMMTigr db_id=TIGR01980 from=19 to=468 evalue=5.6e-279 interpro_id=IPR010231 interpro_description=SUF system FeS cluster assembly, SufB GO=Molecular Function: protein binding (GO:0005515), Biological Process: iron-sulfur cluster assembly (GO:0016226))
ACD43_56_8

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4182..4910
DNA (729bp) protein (243aa)
FeS assembly protein SufD
Stabilizer of iron transporter SufD (db=superfamily db_id=SSF101960 from=26 to=237 evalue=2.5e-51)
UPF0051 (db=HMMPfam db_id=PF01458 from=23 to=212 evalue=1.9e-47 interpro_id=IPR000825 interpro_description=SUF system FeS cluster assembly, SufBD GO=Molecular Function: protein binding (GO:0005515), Biological Process: iron-sulfur cluster assembly (GO:0016226))
Uncharacterized protein {ECO:0000313|EMBL:EKD76173.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD43_56_9

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4897..5655
DNA (759bp) protein (253aa)
cysteine desulfurase SufS
seg (db=Seg db_id=seg from=238 to=249)
AA_TRANSFER_CLASS_5 (db=PatternScan db_id=PS00595 from=207 to=226 evalue=0.0 interpro_id=IPR020578 interpro_description=Aminotransferase class-V pyridoxal-phosphate binding site)
Aminotran_5 (db=HMMPfam db_id=PF00266 from=16 to=239 evalue=7.6e-89 interpro_id=IPR000192 interpro_description=Aminotransferase, class V/Cysteine desulfurase GO=Biological Process: metabolic process (GO:0008152))
ACD43_56_10
Paraglaciecola psychrophila, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5657..5743
DNA (87bp) protein (29aa)
Aminotran_5 (db=HMMPfam db_id=PF00266 from=1 to=29 evalue=1.9e-06 interpro_id=IPR000192 interpro_description=Aminotransferase, class V/Cysteine desulfurase GO=Biological Process: metabolic process (GO:0008152))
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=1129794 species="Bacteria; Proteo
Displaying 10 items

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