ggKbase home page

QZM_A2_scaffold_1296

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
QZM_A2_scaffold_1296_1
R_OP11_Roizmanbacteria_39_9, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(1..576)
DNA (576bp) protein (192aa)
seg 8..19 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OP11_Roizmanbacteria_39_9_curated
QZM_A2_scaffold_1296_trna_4
unknown

Not on your lists

comp(675..748)
DNA (74bp)
transferRNA Asp
QZM_A2_scaffold_1296_trna_3
unknown

Not on your lists

comp(753..826)
DNA (74bp)
transferRNA His
QZM_A2_scaffold_1296_2
R_OP11_Roizmanbacteria_41_22, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

906..2201
DNA (1296bp) protein (432aa)
miaB1; 2-methylthioadenine synthetase bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
yqeV; Fe-S oxidoreductase
Tax=RIFCSPLOWO2_01_FULL_OP11_Roizmanbacteria_41_22_curated
QZM_A2_scaffold_1296_trna_1
unknown

Not on your lists

2201..2273
DNA (73bp)
transferRNA Val
QZM_A2_scaffold_1296_3
GWA2_OP11_nov_36_23, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(2318..3736)
DNA (1419bp) protein (473aa)
Cysteine-tRNA ligase {ECO:0000313|EMBL:KKQ01780.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWA2_36_23.;"
Cysteine--tRNA ligase bin=GWF2_CPR3_35_18 species=uncultured microorganism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_CPR3_35_18 organism_group=CPR3
Cysteine-tRNA ligase
QZM_A2_scaffold_1296_4
R_OP11_Roizmanbacteria_37_12, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(3763..4275)
DNA (513bp) protein (171aa)
coiled-coil 19..54 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OP11_Roizmanbacteria_37_12_curated
QZM_A2_scaffold_1296_5
GWA2_OP11_34_18_partial, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(4282..4599)
DNA (318bp) protein (106aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP61476.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWA2_34_18.;"
protein of unknown function DUF59 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
Component of ring hydroxylating complex
QZM_A2_scaffold_1296_6
RHI_OP11_Roizmanbacteria_36_11, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

4620..6314
DNA (1695bp) protein (565aa)
putative Zn-dependent hydrolase; K12574 ribonuclease J [EC:3.1.-.-] bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_OP11_Roizmanbacteria_36_11_curated
QZM_A2_scaffold_1296_7
RHI_OP11_Roizmanbacteria_41_18, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

6316..6936
DNA (621bp) protein (207aa)
Recombination protein RecR Tax=uncultured bacterium RepID=K2EWW5_9BACT
recR; recombination protein RecR
Tax=RIFCSPHIGHO2_12_OP11_Roizmanbacteria_41_18_curated
QZM_A2_scaffold_1296_8
GWC1_OP11_37_12, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(7020..7865)
DNA (846bp) protein (282aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:KKQ23149.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWC1_37_12.;"
ribose-phosphate pyrophosphokinase
QZM_A2_scaffold_1296_9
GWA2_OP11_nov_36_23, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(7873..8127)
DNA (255bp) protein (85aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ01788.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWA2_36_23.;"
id=5084917 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
QZM_A2_scaffold_1296_10
GWA2_OP11_34_18_partial, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(8154..9200)
DNA (1047bp) protein (349aa)
DNA polymerase III, subunits gamma and tau (EC:2.7.7.7); K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
Polymerase III gamma subunit protein {ECO:0000313|EMBL:KKP61482.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWA2_34_18.;"
DNA polymerase III subunits gamma and tau
QZM_A2_scaffold_1296_11
GWA2_OP11_35_19, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(9200..9514)
DNA (315bp) protein (105aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP69418.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWA2_35_19.;"
UPF0054 16..114 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
QZM_A2_scaffold_1296_12
RHI_OP11_Roizmanbacteria_36_11, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(9518..9700)
DNA (183bp) protein (61aa)
seg 44..54 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
Tax=RIFCSPHIGHO2_12_FULL_OP11_Roizmanbacteria_36_11_curated
QZM_A2_scaffold_1296_13
GWC2_OP11_ACD12-rel_34_23, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(9743..10576)
DNA (834bp) protein (278aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP60462.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWC2_34_23.;"
hypothetical protein bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
hypothetical protein
QZM_A2_scaffold_1296_14
RHI_OP11_Roizmanbacteria_37_23, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists


comp(10573..11814)
DNA (1242bp) protein (414aa)
proS; Proline--tRNA ligase (EC:6.1.1.15)
Proline-tRNA ligase Tax=uncultured bacterium RepID=K2AN96_9BACT
Tax=RIFCSPHIGHO2_12_FULL_OP11_Roizmanbacteria_37_23_curated
QZM_A2_scaffold_1296_15
R_OP11_Roizmanbacteria_39_12c, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(11817..12365)
DNA (549bp) protein (183aa)
cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14] bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
Tax=RIFCSPHIGHO2_01_FULL_OP11_Roizmanbacteria_39_12c_curated
QZM_A2_scaffold_1296_16
GWA2_OP11_nov_36_23, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(12362..13429)
DNA (1068bp) protein (356aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2EYC5_9BACT
Membrane-associated zinc metalloprotease {ECO:0000313|EMBL:KKQ01796.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWA2_36_23.;"
membrane-associated zinc metalloprotease
QZM_A2_scaffold_1296_17
R_OP11_Roizmanbacteria_39_12c, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(13426..13980)
DNA (555bp) protein (185aa)
ribosome recycling factor; K02838 ribosome recycling factor bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
frr; Ribosome recycling factor
Tax=RIFCSPHIGHO2_01_FULL_OP11_Roizmanbacteria_39_12c_curated
QZM_A2_scaffold_1296_18
GWC1_OP11_37_12, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(13993..14448)
DNA (456bp) protein (152aa)
Uncharacterized protein (Fragment) Tax=uncultured bacterium RepID=K2EVN2_9BACT
Elongation factor Ts {ECO:0000313|EMBL:KKQ23139.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWC1_37_12.;"
translation elongation factor Ts
QZM_A2_scaffold_1296_19
RHI_OP11_Roizmanbacteria_36_11, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists


comp(14464..15129)
DNA (666bp) protein (222aa)
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
rpsB; 30S ribosomal protein S2
Tax=RIFCSPHIGHO2_12_FULL_OP11_Roizmanbacteria_36_11_curated
QZM_A2_scaffold_1296_20
R_OP11_Roizmanbacteria_35_13, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(15175..16050)
DNA (876bp) protein (292aa)
hypothetical protein Tax=Candidatus Microgenomatus auricola SCGC AAA011-E14 RepID=UPI00036E2D61
UTP--glucose-1-phosphate uridylyltransferase
Tax=RIFCSPLOWO2_01_FULL_OP11_Roizmanbacteria_35_13_curated
QZM_A2_scaffold_1296_21
R_OP11_Roizmanbacteria_39_9, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

comp(16053..16466)
DNA (414bp) protein (138aa)
Invasin/intimin cell-adhesion fragments bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
Tax=RIFCSPHIGHO2_02_FULL_OP11_Roizmanbacteria_39_9_curated
QZM_A2_scaffold_1296_22
GWA2_OP11_34_18_partial, Roizmanbacteria, Microgenomates, Bacteria

Not on your lists

comp(16646..18916)
DNA (2271bp) protein (757aa)
ATPases with chaperone activity, ATP-binding subunit Tax=Faecalibacterium prausnitzii RepID=D4KC13_9FIRM bin=ACD12 species=Faecalibacterium prausnitzii genus=Faecalibacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
Negative regulator of genetic competence ClpC/mecB {ECO:0000313|EMBL:KKP61416.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Roizmanbacteria) bacterium GW2011_GWA2_34_18.;"
negative regulator of genetic competence ClpC/mecB
QZM_A2_scaffold_1296_23
RHI_OP11_Roizmanbacteria_41_18, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

18983..20011
DNA (1029bp) protein (343aa)
putative cellulose biosynthesis protein CelD bin=GWC1_OP11_49_16_COMPLETE species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC1_OP11_49_16_COMPLETE organism_group=OP11 (Microgenomates)
Tax=RIFCSPHIGHO2_12_OP11_Roizmanbacteria_41_18_curated
QZM_A2_scaffold_1296_trna_2
unknown

Not on your lists

comp(20014..20085)
DNA (72bp)
transferRNA Ile
QZM_A2_scaffold_1296_24
RHI_OP11_Roizmanbacteria_36_11, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

20349..21173
DNA (825bp) protein (275aa)
hypothetical protein; K09134 hypothetical protein bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_OP11_Roizmanbacteria_36_11_curated
QZM_A2_scaffold_1296_16S_1
unknown

Not on your lists

comp(21254..22302)
DNA (1049bp)
16S ribosomal RNA (16S rRNA)
Displaying 29 items

View Taxonomy