ggKbase home page

07M_4_2014_scaffold_3862

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
07M_4_2014_scaffold_3862_1
R_OD1_47_10b, Parcubacteria, Bacteria

Not on your lists

comp(2..544)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EFS5_9CHLR
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_47_10b_curated
07M_4_2014_scaffold_3862_2
GWA2_OD1_36_10, Parcubacteria, Bacteria

Not on your lists

comp(658..1896)
DNA (1239bp) protein (413aa)
murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8); K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] id=5803710 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
murC; UDP-N-acetylmuramate--L-alanine ligase MurC (EC:6.3.2.8)
UDP-N-acetylmuramate-L-alanine ligase {ECO:0000313|EMBL:KKP90244.1}; Flags: Fragment;; TaxID=1618808 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_36_10.;"
07M_4_2014_scaffold_3862_3
RBG_16_OP11_44_10_curated, Microgenomates, Bacteria

Not on your lists

comp(1931..2665)
DNA (735bp) protein (245aa)
NADH ubiquinone oxidoreductase, 20 Kd subunit family id=2357322 bin=GWD1_TM7_39_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=ACD58 tax=GWD1_TM7_39_7 organism_group=CPR2 organism_desc=Same as C1_41_48, C2_39_35, D2_39_7
NADH ubiquinone oxidoreductase 20 kDa subunit
Tax=RBG_16_OP11_44_10_curated
07M_4_2014_scaffold_3862_4
R_RIF_OD1_08_38_39, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(2691..3518)
DNA (828bp) protein (276aa)
Oxidoreductase FAD/NAD(P)-binding domain protein id=2739608 bin=GWC1_TM7_41_48 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_TM7_41_48 organism_group=TM7
Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain-containing protein
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_08_38_39_curated
07M_4_2014_scaffold_3862_5
R_RIF_OD1_08_38_39, RIF-OD1-8, Parcubacteria, Bacteria

Not on your lists

comp(3511..4449)
DNA (939bp) protein (313aa)
Putative anaerobic sulfite reductase, A subunit id=2107930 bin=GWD2_CPR2_39_7 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_CPR2_39_7 organism_group=CPR2 organism_desc=Same as C1_41_48, C2_39_35, D1_39_7
anaerobic sulfite reductase subunit A
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_08_38_39_curated
07M_4_2014_scaffold_3862_trna_2
unknown

Not on your lists

comp(4849..4919)
DNA (71bp)
transferRNA Gly
07M_4_2014_scaffold_3862_6
GWA1_OD1_44_9_plus, Azambacteria, Parcubacteria, Bacteria

Not on your lists

comp(4936..5322)
DNA (387bp) protein (129aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT81539.1}; TaxID=1618610 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWA1_44_9.;"
transmembrane_regions id=5803575 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
07M_4_2014_scaffold_3862_7

Not on your lists

comp(5478..7259)
DNA (1782bp) protein (594aa)
Elongation factor 4 {ECO:0000313|EMBL:KKR60057.1}; TaxID=1618924 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_40_31.;"
GTP-binding protein LepA id=4968540 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin rbh
GTP-binding protein LepA
07M_4_2014_scaffold_3862_trna_1
unknown

Not on your lists

comp(7260..7331)
DNA (72bp)
transferRNA Ile
07M_4_2014_scaffold_3862_16S_1
unknown

Not on your lists

comp(7414..8789)
DNA (1376bp)
16S ribosomal RNA (16S rRNA)
07M_4_2014_scaffold_3862_8
unknown

Not on your lists

comp(8793..9392)
DNA (600bp) protein (200aa)

This feature has no annotations

07M_4_2014_scaffold_3862_9
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(9593..10000)
DNA (408bp) protein (136aa)
protein-export membrane protein SecF; K03074 preprotein translocase subunit SecF id=5803712 bin=OD1_GWC2_34_28 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
secF; preprotein translocase subunit SecF
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
07M_4_2014_scaffold_3862_10
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(10002..10607)
DNA (606bp) protein (202aa)
protein-export membrane protein SecD; K03072 preprotein translocase subunit SecD id=5803713 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
protein-export membrane protein SecD
Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
07M_4_2014_scaffold_3862_11

Not on your lists

comp(10640..10936)
DNA (297bp) protein (99aa)
Preprotein translocase subunit SecD {ECO:0000313|EMBL:KKR46983.1}; TaxID=1618815 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_143.;"
protein-export membrane protein SecD; K03072 preprotein translocase subunit SecD id=5803713 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
protein-export membrane protein SecD
07M_4_2014_scaffold_3862_12

Not on your lists

comp(10973..11530)
DNA (558bp) protein (186aa)
bcrC; undecaprenyl-diphosphatase BcrC (EC:3.6.1.27)
Bacitracin transport permease protein BCRC {ECO:0000313|EMBL:KKR04026.1}; TaxID=1618962 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_13b.;"
Bacitracin transport permease protein BcrC id=4530142 bin=GWF2_Firmicute_51_9 species=Brevibacillus laterosporus genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
07M_4_2014_scaffold_3862_13

Not on your lists

comp(11527..12042)
DNA (516bp) protein (172aa)
Methylenetetrahydrofolate dehydrogenase (NADP(+)) (EC:1.5.1.5)
Bifunctional protein FolD {ECO:0000313|EMBL:KKS34210.1}; TaxID=1618927 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_42_13.;"
Bifunctional protein FolD id=4530143 bin=GWF2_Firmicute_51_9 species=Thiovulum sp. ES genus=Thiovulum taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWF2_Firmicute_51_9 organism_group=Firmicute
07M_4_2014_scaffold_3862_14
unknown

Not on your lists

comp(12820..12996)
DNA (177bp) protein (59aa)

This feature has no annotations

07M_4_2014_scaffold_3862_15
RIFOXYD1_FULL_OD1_44_32_curated, Parcubacteria, Bacteria

Not on your lists

comp(13041..14198)
DNA (1158bp) protein (386aa)
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
id=5227252 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria) rbh
Tax=RIFOXYD1_FULL_OD1_44_32_curated
Displaying 18 items

View Taxonomy