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bjp_ig3402_scaffold_5660

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
bjp_ig3402_scaffold_5660_1
GWA2_OD1_44_15_partial, Parcubacteria, Bacteria

Not on your lists


comp(3..221)
DNA (219bp) protein (73aa)
50S ribosomal protein L4 {ECO:0000313|EMBL:KKT44751.1}; TaxID=1618831 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_44_15.;"
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 id=5227352 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
50S ribosomal protein L4
bjp_ig3402_scaffold_5660_2
R_OD1_42_9, Parcubacteria, Bacteria

Not on your lists


comp(311..742)
DNA (432bp) protein (144aa)
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 Tax=RIFCSPLOWO2_01_FULL_OD1_42_9_curated
rplC; Ribosomal protein L3; K02906 large subunit ribosomal protein L3 id=5802993 bin=OD1_GWC2_34_28 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
50S ribosomal protein L3
bjp_ig3402_scaffold_5660_3
GWA2_OD1_53_7_partial, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


comp(739..1086)
DNA (348bp) protein (116aa)
30S ribosomal protein S10 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZG1_9BACT
30S ribosomal protein S10 {ECO:0000313|EMBL:KKW36902.1}; TaxID=1618650 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_53_7.;"
rpsJ; 30S ribosomal protein S10
bjp_ig3402_scaffold_5660_4
R_OD1_Giovannonibacteria_46_20, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(1086..2285)
DNA (1200bp) protein (400aa)
translation elongation factor Tu; K02358 elongation factor Tu Tax=RIFCSPHIGHO2_02_FULL_OD1_Giovannonibacteria_46_20_curated
Elongation factor Tu id=3736618 bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
elongation factor Tu
bjp_ig3402_scaffold_5660_5

Not on your lists

comp(2436..3329)
DNA (894bp) protein (298aa)
hypothetical protein BoklC_20579 n=1 Tax=Burkholderia oklahomensis C6786 RepID=UPI00016A8A3C id=8279 bin=ACD15 species=Burkholderia oklahomensis genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:EKE11118.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
bjp_ig3402_scaffold_5660_6
GWB2_OD1_rel_46_37, Azambacteria, Parcubacteria, Bacteria

Not on your lists

3418..4821
DNA (1404bp) protein (468aa)
Modification methylase HpaI n=1 Tax=Strawberry lethal yellows phytoplasma (CPA) str. NZSb11 RepID=R4RPP0_PHYAS
Methylase protein {ECO:0000313|EMBL:KKU38485.1}; TaxID=1618618 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWB2_46_37.;"
hpaIM; Modification methylase HpaI
bjp_ig3402_scaffold_5660_7
RIFOXYA2_FULL_OD1_Falkowbacteria_38_12_curated, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(4823..5518)
DNA (696bp) protein (232aa)
type II restriction enzyme TaqI (EC:3.1.21.4)
Type-2 restriction enzyme TaqI n=1 Tax=Thermus aquaticus RepID=T2TA_THEAQ
type II restriction enzyme TthHB8I Tax=RIFOXYA2_FULL_OD1_Falkowbacteria_38_12_curated
bjp_ig3402_scaffold_5660_8
unknown

Not on your lists

comp(5533..5625)
DNA (93bp) protein (31aa)

This feature has no annotations

bjp_ig3402_scaffold_5660_9
R_OD1_41_19, Parcubacteria, Bacteria

Not on your lists

comp(5618..6052)
DNA (435bp) protein (145aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PUG8_9BACT id=130154 bin=ACD7 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein Tax=RIFCSPHIGHO2_02_OD1_41_19_curated
hypothetical protein
bjp_ig3402_scaffold_5660_10
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

comp(6057..6503)
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PUG7_9BACT
DNA polymerase beta domain protein region Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
bjp_ig3402_scaffold_5660_11
GWA2_OD1_45_90, Azambacteria, Parcubacteria, Bacteria

Not on your lists

comp(6551..8650)
DNA (2100bp) protein (700aa)
Elongation factor G 1 {ECO:0000313|EMBL:KKU18131.1}; TaxID=1618614 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWA2_45_90.;"
fusA-3; elongation factor G; K02355 elongation factor G id=5802997 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
translation elongation factor G
bjp_ig3402_scaffold_5660_12
unknown

Not on your lists

comp(8910..9044)
DNA (135bp) protein (45aa)

This feature has no annotations

bjp_ig3402_scaffold_5660_13
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

comp(9058..9690)
DNA (633bp) protein (211aa)
Alanyl-tRNA editing protein AlaX n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZQT8_THELI
alanyl-tRNA synthetase Tax=CG_CPArch01-01
alanyl-tRNA editing protein AlaX
bjp_ig3402_scaffold_5660_14
Parcubacteria bacterium GW2011_GWD2_40_9, Parcubacteria, Bacteria

Not on your lists


comp(9725..10168)
DNA (444bp) protein (148aa)
30S ribosomal protein S7 {ECO:0000313|EMBL:KKR82114.1}; TaxID=1618943 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWD2_40_9.;"
30S ribosomal protein S7 id=5227520 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
30S ribosomal protein S7
bjp_ig3402_scaffold_5660_15
R_OD1_39_11, Parcubacteria, Bacteria

Not on your lists


comp(10256..10705)
DNA (450bp) protein (150aa)
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=RIFCSPLOWO2_01_FULL_OD1_39_11_curated
30S ribosomal protein S12 id=3423314 bin=GWA1_ZB2_49_26 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
30S ribosomal protein S12
bjp_ig3402_scaffold_5660_16
R_RIF_OD1_12_45_11c, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(10702..11328)
DNA (627bp) protein (209aa)
transmembrane protein Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_12_45_11c_curated
peptidase M50 id=5803003 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
bjp_ig3402_scaffold_5660_trna_1
unknown

Not on your lists

11547..11634
DNA (88bp)
transferRNA
bjp_ig3402_scaffold_5660_17
R_OD1_Campbellbacteria_35_12, Campbellbacteria, Parcubacteria, Bacteria

Not on your lists

11639..12022
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037A71CB
yst1G; general secretion pathway protein G; K02456 general secretion pathway protein G Tax=RIFCSPLOWO2_02_OD1_Campbellbacteria_35_12_curated
Type II secretion system protein G
bjp_ig3402_scaffold_5660_18
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

12023..12493
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZZ67_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKT21099.1}; TaxID=1618874 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8.;"
bjp_ig3402_scaffold_5660_trna_2
unknown

Not on your lists

12498..12570
DNA (73bp)
transferRNA
bjp_ig3402_scaffold_5660_19
BJP_IG2158_OD1_28_51, Parcubacteria, Bacteria

Not on your lists

12607..12861
DNA (255bp) protein (85aa)
Uncharacterized protein family UPF0150 n=2 Tax=Clostridia RepID=F6CIM4_DESK7
hypothetical protein
Tax=BJP_IG2158_OD1_28_51
bjp_ig3402_scaffold_5660_20
BJP_IG2158_OD1_28_51, Parcubacteria, Bacteria

Not on your lists

12867..13088
DNA (222bp) protein (74aa)
YcfA-like protein; K07339 hypothetical protein id=5179 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
periplasmic or secreted lipoprotein
Tax=BJP_IG2158_OD1_28_51
bjp_ig3402_scaffold_5660_21
unknown

Not on your lists

13184..13516
DNA (333bp) protein (111aa)

This feature has no annotations

bjp_ig3402_scaffold_5660_22
R_OD1_48_14, Parcubacteria, Bacteria

Not on your lists


comp(13531..13782)
DNA (252bp) protein (84aa)
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RIFCSPLOWO2_01_FULL_OD1_48_14_curated
30S ribosomal protein S20 id=5227449 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
bjp_ig3402_scaffold_5660_23
GWB1_OD1_43_8, Parcubacteria, Bacteria

Not on your lists

13828..14394
DNA (567bp) protein (189aa)
Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] id=5803226 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Holliday junction ATP-dependent DNA helicase RuvA Tax=GWB1_OD1_43_8
Holliday junction DNA helicase RuvA
bjp_ig3402_scaffold_5660_24
R_RIF_OD107_43_32, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

14512..14970
DNA (459bp) protein (153aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD107_43_32_curated
protein of unknown function DUF88 id=131653 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein
bjp_ig3402_scaffold_5660_25
OD1_GWC2_34_28, Campbellbacteria, Parcubacteria, Bacteria

Not on your lists

14967..16256
DNA (1290bp) protein (430aa)
UDP-N-acetylmuramyl-tripeptide synthetase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] id=5803224 bin=OD1_GWC2_34_28 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome rbh
UDP-N-acetylmuramyl-tripeptide synthetase; K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=OD1_GWC2_34_28
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
bjp_ig3402_scaffold_5660_26
R_OD1_42_9, Parcubacteria, Bacteria

Not on your lists

16465..17025
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003615D0F
PaaX family transcriptional regulator; K02616 phenylacetic acid degradation operon negative regulatory protein Tax=RIFCSPLOWO2_01_FULL_OD1_42_9_curated
PaaX family transcrtiptional regulator
bjp_ig3402_scaffold_5660_27
Archaeoglobus profundus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

17124..17660
DNA (537bp) protein (179aa)
2'-5' RNA ligase (EC:6.5.1.-)
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] id=5241681 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=572546 species="Ar
bjp_ig3402_scaffold_5660_28
R_OD1_42_9, Parcubacteria, Bacteria

Not on your lists

17639..18427
DNA (789bp) protein (263aa)
Nei; formamidopyrimidine-DNA glycosylase; K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] Tax=RIFCSPLOWO2_01_FULL_OD1_42_9_curated
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036A1C0A
Nei; formamidopyrimidine-DNA glycosylase
Displaying items 1-30 of 33 in total

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