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ACD15_36

Alias: ACD15_747.23677.17

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD15_36_1

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227..1294
DNA (1068bp) protein (356aa)
geranylgeranyl pyrophosphate synthase
Putative geranylgeranyl pyrophosphate synthetase (GGPP synthetase) (GGPS) n=1 Tax=uncultured archaeon RepID=D1JFP7_9ARCH (db=UNIREF evalue=5.0e-66 bit_score=255.0 identity=41.36 coverage=98.876404494382)
seg (db=Seg db_id=seg from=92 to=101)
POLYPRENYL_SYNTHASE_2 (db=PatternScan db_id=PS00444 from=233 to=245 evalue=0.0 interpro_id=IPR000092 interpro_description=Polyprenyl synthetase GO=Biological Process: isoprenoid biosynthetic process (GO:0008299))
ACD15_36_2

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1362..2078
DNA (717bp) protein (239aa)
Undecaprenyl pyrophosphate synthetase 1 n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M707_CAPGI (db=UNIREF evalue=2.0e-40 bit_score=169.0 identity=41.45 coverage=95.397489539749)
Undecaprenyl diphosphate synthase (EC:2.5.1.31)
DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE (db=HMMPanther db_id=PTHR10291 from=9 to=238 evalue=2.7e-62 interpro_id=IPR001441 interpro_description=Di-trans-poly-cis-decaprenylcistransferase-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
Prenyltransf (db=HMMPfam db_id=PF01255 from=16 to=238 evalue=3.0e-58 interpro_id=IPR001441 interpro_description=Di-trans-poly-cis-decaprenylcistransferase-like GO=Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups (GO:0016765))
ACD15_36_3

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2223..3329
DNA (1107bp) protein (369aa)
Cytochrome c biogenesis protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
seg (db=Seg db_id=seg from=5 to=19)
seg (db=Seg db_id=seg from=21 to=32)
ACD15_36_4

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3421..3735
DNA (315bp) protein (105aa)
thioredoxin
seg (db=Seg db_id=seg from=76 to=91)
THIOREDOXIN_1 (db=PatternScan db_id=PS00194 from=22 to=40 evalue=0.0 interpro_id=IPR017937 interpro_description=Thioredoxin, conserved site GO=Biological Process: cell redox homeostasis (GO:0045454))
thioredoxin: thioredoxin (db=HMMTigr db_id=TIGR01068 from=5 to=104 evalue=2.2e-46 interpro_id=IPR005746 interpro_description=Thioredoxin GO=Biological Process: glycerol ether metabolic process (GO:0006662), Molecular Function: electron carrier activity (GO:0009055), Molecular Function: protein disulfide oxidoreductase activity (GO:0015035), Biological Process: cell redox homeostasis (GO:0045454))
ACD15_36_5

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3740..4663
DNA (924bp) protein (308aa)
thioredoxin reductase
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
PYRIDINE_REDOX_2 (db=PatternScan db_id=PS00573 from=134 to=154 evalue=0.0 interpro_id=IPR008255 interpro_description=Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
PNDRDTASEII (db=FPrintScan db_id=PR00469 from=105 to=113 evalue=2.3e-53 interpro_id=IPR000103 interpro_description=Pyridine nucleotide-disulphide oxidoreductase, class-II GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
ACD15_36_6

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4668..5792
DNA (1125bp) protein (375aa)
NAD-dependent malic enzyme
NAD-dependent malic enzyme
NAD-dependent malic enzyme n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACD3_CARHZ (db=UNIREF evalue=3.0e-112 bit_score=408.0 identity=58.65 coverage=97.6)
seg (db=Seg db_id=seg from=171 to=194)
ACD15_36_7

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5862..6302
DNA (441bp) protein (147aa)
hypothetical protein
Uncharacterised conserved protein, UCP004681 type (db=HMMPIR db_id=PIRSF004681 from=1 to=146 evalue=5.5e-42 interpro_id=IPR001602 interpro_description=Uncharacterised protein family UPF0047)
YjbQ-like (db=superfamily db_id=SSF111038 from=1 to=146 evalue=2.5e-37 interpro_id=IPR001602 interpro_description=Uncharacterised protein family UPF0047)
UPF0047 (db=HMMPfam db_id=PF01894 from=19 to=144 evalue=4.5e-34 interpro_id=IPR001602 interpro_description=Uncharacterised protein family UPF0047)
ACD15_36_8

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6310..6930
DNA (621bp) protein (207aa)
L-isoaspartyl protein carboxyl methyltransferase (EC:2.1.1.77)
seg (db=Seg db_id=seg from=185 to=200)
PCMT (db=HMMPfam db_id=PF01135 from=2 to=202 evalue=9.6e-48 interpro_id=IPR000682 interpro_description=Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO=Molecular Function: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity (GO:0004719), Biological Process: protein modification process (GO:0006464))
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=3 to=204 evalue=1.2e-44)
ACD15_36_9

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6939..7955
DNA (1017bp) protein (339aa)
aminodeoxychorismate lyase
seg (db=Seg db_id=seg from=9 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
YceG (db=HMMPfam db_id=PF02618 from=39 to=336 evalue=1.3e-80 interpro_id=IPR003770 interpro_description=Uncharacterised protein family YceG-like)
ACD15_36_10

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8061..9161
DNA (1101bp) protein (367aa)
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.8.1.-)
tRNA-specific 2-thiouridylase mnmA n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HU94_9FIRM (db=UNIREF evalue=5.0e-83 bit_score=311.0 identity=45.26 coverage=97.0027247956403)
trmU: tRNA (5-methylaminomethyl-2-thiouridyl (db=HMMTigr db_id=TIGR00420 from=7 to=364 evalue=2.4e-137 interpro_id=IPR004506 interpro_description=tRNA-specific 2-thiouridylase GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA processing (GO:0008033), Molecular Function: transferase activity (GO:0016740))
ACD15_36_11

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9172..9459
DNA (288bp) protein (96aa)
coiled-coil (db=Coil db_id=coil from=50 to=92 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE10789.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_36_12

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9479..9700
DNA (222bp) protein (74aa)
9479..9700 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE10790.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_36_13

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9720..11660
DNA (1941bp) protein (647aa)
alanine--tRNA ligase
alanine--tRNA ligase
Alanyl-tRNA synthetase n=1 Tax=Treponema denticola RepID=SYA_TREDE (db=UNIREF evalue=1.0e-165 bit_score=587.0 identity=50.62 coverage=91.1901081916538)
seg (db=Seg db_id=seg from=377 to=397)
ACD15_36_14

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11685..13268
DNA (1584bp) protein (528aa)
11685..13268 + (rbs_motif=TAA rbs_spacer=11bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE10792.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_36_15

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13482..14750
DNA (1269bp) protein (423aa)
cell division protein (septum formation) n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B214C (db=UNIREF evalue=5.0e-106 bit_score=388.0 identity=47.51 coverage=94.0898345153664)
actin
Actin-like ATPase domain (db=superfamily db_id=SSF53067 from=225 to=349 evalue=3.2e-18)
ACD15_36_16

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14825..16834
DNA (2010bp) protein (670aa)
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KT03_9BACT (db=UNIREF evalue=7.0e-15 bit_score=86.7 identity=25.33 coverage=52.5373134328358)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=281 to=303)
coiled-coil (db=Coil db_id=coil from=45 to=66 evalue=NA)
ACD15_36_17

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17098..17319
DNA (222bp) protein (74aa)
translation initiation factor IF-1
Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CA39_9FIRM (db=UNIREF evalue=6.0e-18 bit_score=93.2 identity=72.73 coverage=72.972972972973)
seg (db=Seg db_id=seg from=4 to=18)
infA: translation initiation factor IF-1 (db=HMMTigr db_id=TIGR00008 from=4 to=72 evalue=1.7e-36 interpro_id=IPR004368 interpro_description=Translation initiation factor IF-1 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
ACD15_36_18

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17321..17434
DNA (114bp) protein (38aa)
seg (db=Seg db_id=seg from=7 to=20)
RIBOSOMAL_L36 (db=PatternScan db_id=PS00828 from=11 to=36 evalue=0.0 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L36 (db=HMMPfam db_id=PF00444 from=1 to=37 evalue=9.6e-21 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR18804 from=1 to=37 evalue=1.2e-18 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD15_36_19

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17551..17937
DNA (387bp) protein (129aa)
rpsM; 30S ribosomal protein S13
30S ribosomal protein S13 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CEB6_9FIRM (db=UNIREF evalue=7.0e-31 bit_score=135.0 identity=63.37 coverage=76.7441860465116)
seg (db=Seg db_id=seg from=102 to=117)
RIBOSOMAL_S13_1 (db=PatternScan db_id=PS00646 from=88 to=101 evalue=0.0 interpro_id=IPR018269 interpro_description=Ribosomal protein S13, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD15_36_20

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18030..18515
DNA (486bp) protein (162aa)
30S ribosomal protein S11
seg (db=Seg db_id=seg from=37 to=51)
bact_S11: 30S ribosomal protein S11 (db=HMMTigr db_id=TIGR03632 from=42 to=158 evalue=5.7e-62 interpro_id=IPR019981 interpro_description=Ribosomal protein S11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 (db=HMMPanther db_id=PTHR11759 from=41 to=161 evalue=3.1e-55 interpro_id=IPR001971 interpro_description=Ribosomal protein S11 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD15_36_21

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18627..19259
DNA (633bp) protein (211aa)
rpsD; 30S ribosomal protein S4
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=97 to=121 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=3 to=210 evalue=3.1e-73 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=2 to=210 evalue=5.4e-63)
ACD15_36_22

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19299..20297
DNA (999bp) protein (333aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
seg (db=Seg db_id=seg from=234 to=262)
coiled-coil (db=Coil db_id=coil from=244 to=265 evalue=NA)
rpoA: DNA-directed RNA polymerase, alpha sub (db=HMMTigr db_id=TIGR02027 from=26 to=331 evalue=1.9e-108 interpro_id=IPR011773 interpro_description=DNA-directed RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351))
ACD15_36_23

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20383..20748
DNA (366bp) protein (122aa)
seg (db=Seg db_id=seg from=29 to=56)
coiled-coil (db=Coil db_id=coil from=34 to=62 evalue=NA)
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413 from=1 to=121 evalue=2.1e-31 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413:SF3 from=1 to=121 evalue=2.1e-31)
ACD15_36_24

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20826..21233
DNA (408bp) protein (136aa)
50S ribosomal protein L13
Ribosomal protein L13 n=1 Tax=Filifactor alocis ATCC 35896 RepID=D6GR79_9FIRM (db=UNIREF evalue=2.0e-32 bit_score=140.0 identity=50.76 coverage=95.5882352941177)
rplM_bact: ribosomal protein L13 (db=HMMTigr db_id=TIGR01066 from=3 to=133 evalue=1.7e-41 interpro_id=IPR005823 interpro_description=Ribosomal protein L13, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L13 (db=HMMPfam db_id=PF00572 from=12 to=131 evalue=3.9e-41 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD15_36_25

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21278..21859
DNA (582bp) protein (194aa)
30S ribosomal protein S9
seg (db=Seg db_id=seg from=2 to=54)
coiled-coil (db=Coil db_id=coil from=23 to=44 evalue=NA)
RIBOSOMAL_S9 (db=PatternScan db_id=PS00360 from=132 to=150 evalue=0.0 interpro_id=IPR020574 interpro_description=Ribosomal protein S9, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD15_36_26

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21992..23713
DNA (1722bp) protein (574aa)
hypothetical protein
seg (db=Seg db_id=seg from=542 to=574)
seg (db=Seg db_id=seg from=434 to=454)
seg (db=Seg db_id=seg from=414 to=431)
Displaying 26 items

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