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ACD76_9

Alias: ACD76_7778.12686.18

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD76_9_1

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comp(3..1418)
DNA (1416bp) protein (472aa)
secA; preprotein translocase subunit SecA
secA; preprotein translocase subunit SecA
Protein translocase subunit secA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=SECA_THEYD (db=UNIREF evalue=4.0e-155 bit_score=551.0 identity=59.32 coverage=95.9745762711864)
seg (db=Seg db_id=seg from=405 to=417)
ACD76_9_2

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comp(1643..1987)
DNA (345bp) protein (115aa)
hypothetical protein
Ribosomal_S30AE (db=HMMPfam db_id=PF02482 from=5 to=105 evalue=2.1e-21 interpro_id=IPR003489 interpro_description=Ribosomal protein S30Ae/sigma 54 modulation protein GO=Molecular Function: binding (GO:0005488), Biological Process: primary metabolic process (GO:0044238))
Ribosome binding protein Y (YfiA homologue) (db=superfamily db_id=SSF69754 from=1 to=109 evalue=4.1e-20 interpro_id=IPR003489 interpro_description=Ribosomal protein S30Ae/sigma 54 modulation protein GO=Molecular Function: binding (GO:0005488), Biological Process: primary metabolic process (GO:0044238))
no description (db=Gene3D db_id=G3DSA:3.30.160.100 from=1 to=108 evalue=9.7e-17 interpro_id=IPR003489 interpro_description=Ribosomal protein S30Ae/sigma 54 modulation protein GO=Molecular Function: binding (GO:0005488), Biological Process: primary metabolic process (GO:0044238))
ACD76_9_3

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comp(2004..2969)
DNA (966bp) protein (322aa)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Coprococcus sp. ART55/1 RepID=D5HHE0_9FIRM (db=UNIREF evalue=8.0e-60 bit_score=234.0 identity=41.49 coverage=91.6149068322981)
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
murB: UDP-N-acetylenolpyruvoylglucosamine re (db=HMMTigr db_id=TIGR00179 from=21 to=320 evalue=2.6e-69 interpro_id=IPR003170 interpro_description=UDP-N-acetylenolpyruvoylglucosamine reductase GO=Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762), Biological Process: peptidoglycan biosynthetic process (GO:0009252), Biological Process: oxidation reduction (GO:0055114))
UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE (db=HMMPanther db_id=PTHR21071 from=1 to=320 evalue=3.2e-51 interpro_id=IPR003170 interpro_description=UDP-N-acetylenolpyruvoylglucosamine reductase GO=Molecular Function: UDP-N-acetylmuramate dehydrogenase activity (GO:0008762), Biological Process: peptidoglycan biosynthetic process (GO:0009252), Biological Process: oxidation reduction (GO:0055114))
ACD76_9_4

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3102..3512
DNA (411bp) protein (137aa)
3102..3512 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD32783.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_9_5

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4864..5091
DNA (228bp) protein (76aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
Uncharacterized protein {ECO:0000313|EMBL:EKD32770.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_9_6

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5412..6659
DNA (1248bp) protein (416aa)
glyA; serine hydroxymethyltransferase
glyA; serine hydroxymethyltransferase
Serine hydroxymethyltransferase n=1 Tax=Pelobacter propionicus DSM 2379 RepID=GLYA_PELPD (db=UNIREF evalue=1.0e-136 bit_score=489.0 identity=59.27 coverage=98.3173076923077)
seg (db=Seg db_id=seg from=264 to=275)
ACD76_9_7

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6727..7047
DNA (321bp) protein (107aa)
TrpR like protein, YerC/YecD n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A5W3_NATTJ (db=UNIREF evalue=8.0e-09 bit_score=62.8 identity=33.33 coverage=94.392523364486)
TrpR-like protein YerC/YecD
TrpR-like (db=superfamily db_id=SSF48295 from=1 to=104 evalue=2.0e-16 interpro_id=IPR010921 interpro_description=Trp repressor/replication initiator GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
Trp_repressor (db=HMMPfam db_id=PF01371 from=19 to=100 evalue=2.9e-15 interpro_id=IPR000831 interpro_description=Trp repressor GO=Molecular Function: transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD76_9_8

Not on your lists

7142..7987
DNA (846bp) protein (282aa)
5,10-methylene-tetrahydrofolate dehydrogenase (EC:1.5.1.5 3.5.4.9)
seg (db=Seg db_id=seg from=72 to=83)
THF_DHG_CYH_2 (db=PatternScan db_id=PS00767 from=253 to=261 evalue=0.0 interpro_id=IPR020867 interpro_description=Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
METHYLENETETRAHYDROFOLATE DEHYDROGENASE FAMILY MEMBER (db=HMMPanther db_id=PTHR10025 from=9 to=275 evalue=1.5e-108)
ACD76_9_9

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comp(8220..8393)
DNA (174bp) protein (58aa)
Ribosomal_S23p (db=HMMPfam db_id=PF05635 from=5 to=57 evalue=6.4e-15 interpro_id=IPR008815 interpro_description=23S rRNA-associated protein)
Uncharacterized protein {ECO:0000313|EMBL:EKD32774.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_9_10

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comp(8439..8843)
DNA (405bp) protein (135aa)
seg (db=Seg db_id=seg from=39 to=50)
transmembrane_regions (db=TMHMM db_id=tmhmm from=95 to=117)
transmembrane_regions (db=TMHMM db_id=tmhmm from=69 to=91)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=56)
ACD76_9_11

Not on your lists

comp(8899..10065)
DNA (1167bp) protein (389aa)
aromatic amino acid permease
transmembrane_regions (db=TMHMM db_id=tmhmm from=299 to=316)
transmembrane_regions (db=TMHMM db_id=tmhmm from=321 to=343)
transmembrane_regions (db=TMHMM db_id=tmhmm from=364 to=386)
ACD76_9_12

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10251..11666
DNA (1416bp) protein (472aa)
Replicative DNA helicase n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSV0_9BACT (db=UNIREF evalue=2.0e-132 bit_score=476.0 identity=53.26 coverage=92.3728813559322)
replicative DNA helicase
replicative DNA helicase
DnaB: replicative DNA helicase (db=HMMTigr db_id=TIGR00665 from=8 to=449 evalue=2.5e-234 interpro_id=IPR007692 interpro_description=DNA helicase, DnaB type GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA helicase activity (GO:0003678), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication (GO:0006260))
ACD76_9_13

Not on your lists

11686..11991
DNA (306bp) protein (102aa)
coiled-coil (db=Coil db_id=coil from=8 to=29 evalue=NA)
DUF149 (db=HMMPfam db_id=PF02575 from=6 to=93 evalue=2.9e-17 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
YbaB-like (db=superfamily db_id=SSF82607 from=5 to=99 evalue=1.2e-13 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
no description (db=Gene3D db_id=G3DSA:3.30.1310.10 from=1 to=94 evalue=5.9e-10 interpro_id=IPR004401 interpro_description=Uncharacterised protein family UPF0133)
ACD76_9_14

Not on your lists

12045..12650
DNA (606bp) protein (202aa)
DNA replication and repair protein RecR
coiled-coil (db=Coil db_id=coil from=34 to=62 evalue=NA)
recR: recombination protein RecR (db=HMMTigr db_id=TIGR00615 from=2 to=199 evalue=2.1e-72 interpro_id=IPR000093 interpro_description=RecR protein GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
Recombination protein RecR (db=superfamily db_id=SSF111304 from=2 to=201 evalue=2.3e-63 interpro_id=IPR000093 interpro_description=RecR protein GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
Displaying 14 items

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