ggKbase home page

ACD76_20

Alias: ACD76_7243.28607.18

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD76_20_1

Not on your lists

comp(62..1369)
DNA (1308bp) protein (436aa)
Excinuclease ABC subunit C
Excinuclease ABC subunit C n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0Z5_9PLAN (db=UNIREF evalue=5.0e-64 bit_score=248.0 identity=35.19 coverage=96.7889908256881)
coiled-coil (db=Coil db_id=coil from=223 to=244 evalue=NA)
UvrC_HhH_N (db=HMMPfam db_id=PF08459 from=278 to=420 evalue=5.0e-45 interpro_id=IPR001162 interpro_description=Excinuclease ABC, C subunit, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: nuclease activity (GO:0004518), Biological Process: nucleotide-excision repair (GO:0006289))
ACD76_20_2

Not on your lists

comp(1521..1898)
DNA (378bp) protein (126aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=27)
seg (db=Seg db_id=seg from=53 to=62)
Uncharacterized protein {ECO:0000313|EMBL:EKD32825.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_20_3

Not on your lists

comp(2056..2316)
DNA (261bp) protein (87aa)
excinuclease ABC subunit A
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=83 evalue=1.6e-16)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=1 to=73 evalue=2.8e-10)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=81 evalue=1.5e-06)
ACD76_20_4
GWF2_OD1_41_16, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2261..4660)
DNA (2400bp) protein (800aa)
uvrA; excinuclease ABC subunit A
uvrA; excinuclease ABC subunit A
Excinuclease ABC, A subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKV1_THEYD (db=UNIREF evalue=0.0 bit_score=665.0 identity=48.24 coverage=88.375)
seg (db=Seg db_id=seg from=649 to=654)
ACD76_20_5

Not on your lists

4706..5155
DNA (450bp) protein (150aa)
4706..5155 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD32823.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_20_6

Not on your lists

comp(5397..7403)
DNA (2007bp) protein (669aa)
UvrABC system protein B
UvrABC system protein B
Excinuclease ABC, B subunit n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PAZ9_CLOTS (db=UNIREF evalue=0.0 bit_score=768.0 identity=60.21 coverage=97.6083707025411)
seg (db=Seg db_id=seg from=619 to=637)
ACD76_20_7

Not on your lists

comp(7552..8058)
DNA (507bp) protein (169aa)
nicotinamide-nucleotide adenylyltransferase (EC:2.7.7.1)
no description (db=Gene3D db_id=G3DSA:3.40.50.620 from=1 to=168 evalue=4.9e-31 interpro_id=IPR014729 interpro_description=Rossmann-like alpha/beta/alpha sandwich fold)
Nucleotidylyl transferase (db=superfamily db_id=SSF52374 from=4 to=164 evalue=2.7e-26)
CTP_transf_2 (db=HMMPfam db_id=PF01467 from=7 to=76 evalue=1.1e-13 interpro_id=IPR004820 interpro_description=Cytidylyltransferase GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: nucleotidyltransferase activity (GO:0016779))
ACD76_20_8

Not on your lists

comp(8064..8702)
DNA (639bp) protein (213aa)
seg (db=Seg db_id=seg from=170 to=180)
seg (db=Seg db_id=seg from=134 to=147)
seg (db=Seg db_id=seg from=12 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=31)
ACD76_20_9

Not on your lists

comp(8787..9053)
DNA (267bp) protein (89aa)
ASCH domain protein
PUA domain-like (db=superfamily db_id=SSF88697 from=1 to=66 evalue=6.4e-09 interpro_id=IPR015947 interpro_description=Pseudouridine synthase/archaeosine transglycosylase-like)
ASCH (db=HMMPfam db_id=PF04266 from=10 to=49 evalue=1.6e-05 interpro_id=IPR007374 interpro_description=ASCH domain)
Uncharacterized protein {ECO:0000313|EMBL:EKD32815.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_20_10

Not on your lists

comp(9058..9921)
DNA (864bp) protein (288aa)
seg (db=Seg db_id=seg from=276 to=287)
APH (db=HMMPfam db_id=PF01636 from=40 to=211 evalue=9.2e-07 interpro_id=IPR002575 interpro_description=Aminoglycoside phosphotransferase)
Uncharacterized protein {ECO:0000313|EMBL:EKD32816.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_20_11

Not on your lists

comp(10171..11085)
DNA (915bp) protein (305aa)
cell division protein FtsX
Possible cell division protein FtsX n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D8N8_9ACTN (db=UNIREF evalue=7.0e-16 bit_score=88.2 identity=25.66 coverage=82.9508196721311)
transmembrane_regions (db=TMHMM db_id=tmhmm from=276 to=298)
transmembrane_regions (db=TMHMM db_id=tmhmm from=230 to=252)
ACD76_20_12

Not on your lists

comp(11087..11767)
DNA (681bp) protein (227aa)
cell division ATP-binding protein FtsE
SIGMA54_INTERACT_1 (db=PatternScan db_id=PS00675 from=31 to=44 evalue=0.0 interpro_id=IPR002078 interpro_description=RNA polymerase sigma factor 54, interaction GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: transcription factor binding (GO:0008134))
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=138 to=152 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
FtsE: cell division ATP-binding protein FtsE (db=HMMTigr db_id=TIGR02673 from=1 to=214 evalue=8.3e-115 interpro_id=IPR005286 interpro_description=Cell division ATP-binding protein FtsE GO=Molecular Function: ATP binding (GO:0005524), Biological Process: cell division (GO:0051301))
ACD76_20_13

Not on your lists

comp(12236..13135)
DNA (900bp) protein (300aa)
ppiD2; protein PpiD2
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=14 to=33)
coiled-coil (db=Coil db_id=coil from=98 to=119 evalue=NA)
ACD76_20_14

Not on your lists

comp(13132..13566)
DNA (435bp) protein (145aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=17 to=33)
DivIC (db=HMMPfam db_id=PF04977 from=24 to=97 evalue=2.0e-08 interpro_id=IPR007060 interpro_description=Septum formation initiator GO=Biological Process: cell cycle (GO:0007049))
Uncharacterized protein {ECO:0000313|EMBL:EKD32820.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_20_15

Not on your lists

comp(13550..14227)
DNA (678bp) protein (226aa)
seg (db=Seg db_id=seg from=153 to=173)
transmembrane_regions (db=TMHMM db_id=tmhmm from=53 to=75)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=48)
DUF304 (db=HMMPfam db_id=PF03703 from=76 to=154 evalue=1.3e-09 interpro_id=IPR005182 interpro_description=Protein of unknown function DUF304, transmembrane flanked domain, bacterial)
ACD76_20_16

Not on your lists

comp(14236..14607)
DNA (372bp) protein (124aa)
UDP-N-acetylmuramyl tripeptide synthetase
seg (db=Seg db_id=seg from=6 to=17)
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE (db=HMMPanther db_id=PTHR23135:SF4 from=1 to=122 evalue=1.7e-24)
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=1 to=122 evalue=1.7e-24)
ACD76_20_17
GWA2_OD1_47_26, Parcubacteria, Bacteria

Not on your lists

comp(14604..15599)
DNA (996bp) protein (332aa)
UDP-N-acetylmuramyl tripeptide synthetase
seg (db=Seg db_id=seg from=317 to=331)
FOLYLPOLYGLU_SYNT_1 (db=PatternScan db_id=PS01011 from=39 to=63 evalue=0.0 interpro_id=IPR018109 interpro_description=Folylpolyglutamate synthetase, conserved site GO=Molecular Function: tetrahydrofolylpolyglutamate synthase activity (GO:0004326), Molecular Function: ATP binding (GO:0005524), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=41 to=312 evalue=3.2e-53)
ACD76_20_18

Not on your lists

15690..16379
DNA (690bp) protein (230aa)
seg (db=Seg db_id=seg from=168 to=180)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
Uncharacterized protein {ECO:0000313|EMBL:EKD32807.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_20_19

Not on your lists

comp(16451..17881)
DNA (1431bp) protein (477aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase
seg (db=Seg db_id=seg from=186 to=199)
seg (db=Seg db_id=seg from=305 to=323)
seg (db=Seg db_id=seg from=135 to=145)
ACD76_20_20

Not on your lists

comp(17887..18543)
DNA (657bp) protein (219aa)
family 2 glycosyl transferase
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=4 to=144 evalue=1.2e-26)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=5 to=116 evalue=8.6e-22 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
GLYCOSYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR10859 from=10 to=216 evalue=2.1e-17)
ACD76_20_21

Not on your lists

comp(18540..21185)
DNA (2646bp) protein (882aa)
P-type HAD superfamily ATPase
P-type HAD superfamily ATPase
Calcium-translocating P-type ATPase, PMCA-type n=7 Tax=Thermoanaerobacter RepID=B0K4E0_THEPX (db=UNIREF evalue=3.0e-156 bit_score=556.0 identity=39.13 coverage=98.4126984126984)
transmembrane_regions (db=TMHMM db_id=tmhmm from=817 to=839)
ACD76_20_22

Not on your lists

comp(21229..22356)
DNA (1128bp) protein (376aa)
Glycosyltransferase
Glycosyltransferase n=1 Tax=Butyrivibrio fibrisolvens 16/4 RepID=D4IWN4_BUTFI (db=UNIREF evalue=4.0e-69 bit_score=265.0 identity=39.3 coverage=96.8085106382979)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=20 to=375 evalue=4.0e-69)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=6 to=372 evalue=2.6e-49)
ACD76_20_23

Not on your lists

comp(22940..24052)
DNA (1113bp) protein (371aa)
UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase n=1 Tax=Oribacterium sp. oral taxon 078 str. F0262 RepID=D4CIX7_9FIRM (db=UNIREF evalue=2.0e-45 bit_score=186.0 identity=38.28 coverage=77.3584905660377)
transmembrane_regions (db=TMHMM db_id=tmhmm from=84 to=101)
transmembrane_regions (db=TMHMM db_id=tmhmm from=113 to=135)
ACD76_20_24

Not on your lists

comp(24072..24281)
DNA (210bp) protein (70aa)
24072..24281 - (rbs_motif=TATTA rbs_spacer=5bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD32800.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_20_25

Not on your lists

comp(24324..24635)
DNA (312bp) protein (104aa)
TTHA1013-like (db=superfamily db_id=SSF143100 from=22 to=92 evalue=7.5e-06)
Uncharacterized protein {ECO:0000313|EMBL:EKD32801.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_20_26

Not on your lists

comp(24707..25873)
DNA (1167bp) protein (389aa)
FtsW; cell division membrane protein
Stage V sporulation protein E n=1 Tax=Bacillus coagulans 36D1 RepID=C1P6Z7_BACCO (db=UNIREF evalue=6.0e-56 bit_score=221.0 identity=40.88 coverage=92.0308483290488)
seg (db=Seg db_id=seg from=78 to=92)
seg (db=Seg db_id=seg from=51 to=63)
ACD76_20_27

Not on your lists

comp(25876..26925)
DNA (1050bp) protein (350aa)
hypothetical protein
seg (db=Seg db_id=seg from=195 to=206)
transmembrane_regions (db=TMHMM db_id=tmhmm from=327 to=344)
transmembrane_regions (db=TMHMM db_id=tmhmm from=271 to=293)
ACD76_20_28

Not on your lists

comp(26927..27307)
DNA (381bp) protein (127aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
transmembrane_regions (db=TMHMM db_id=tmhmm from=71 to=93)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=122)
Uncharacterized protein {ECO:0000313|EMBL:EKD32804.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD76_20_29

Not on your lists

comp(27298..27543)
DNA (246bp) protein (82aa)
seg (db=Seg db_id=seg from=23 to=37)
NifU (db=HMMPfam db_id=PF01106 from=7 to=76 evalue=2.2e-18 interpro_id=IPR001075 interpro_description=NIF system FeS cluster assembly, NifU, C-terminal GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: iron-sulfur cluster assembly (GO:0016226), Molecular Function: iron-sulfur cluster binding (GO:0051536))
Fe-S cluster assembly (FSCA) domain-like (db=superfamily db_id=SSF117916 from=1 to=76 evalue=2.4e-15)
IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED (db=HMMPanther db_id=PTHR11178 from=8 to=78 evalue=2.6e-11)
ACD76_20_30

Not on your lists


comp(27613..27897)
DNA (285bp) protein (95aa)
50S ribosomal protein L27
RIBOSOMAL_L27 (db=PatternScan db_id=PS00831 from=34 to=48 evalue=0.0 interpro_id=IPR018261 interpro_description=Ribosomal protein L27, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L27: ribosomal protein L27 (db=HMMTigr db_id=TIGR00062 from=1 to=81 evalue=2.0e-34 interpro_id=IPR001684 interpro_description=Ribosomal protein L27 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L27 (db=HMMPfam db_id=PF01016 from=2 to=74 evalue=4.2e-31 interpro_id=IPR001684 interpro_description=Ribosomal protein L27 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying 30 items

View Taxonomy