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ACD9_199

Alias: ACDUNK_53305.5793.9

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD9_199_1
GWE2_OD1_36_40, Moranbacteria, Parcubacteria, Bacteria

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comp(33..197)
DNA (165bp) protein (55aa)
seg (db=Seg db_id=seg from=27 to=39)
rpmG_bact: ribosomal protein L33 (db=HMMTigr db_id=TIGR01023 from=1 to=54 evalue=2.5e-17 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L33 (db=HMMPfam db_id=PF00471 from=9 to=54 evalue=1.1e-16 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Zn-binding ribosomal proteins (db=superfamily db_id=SSF57829 from=3 to=54 evalue=1.0e-14 interpro_id=IPR011332 interpro_description=Ribosomal protein, zinc-binding domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD9_199_2
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

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comp(903..1562)
DNA (660bp) protein (220aa)
seg (db=Seg db_id=seg from=4 to=23)
seg (db=Seg db_id=seg from=126 to=135)
coiled-coil (db=Coil db_id=coil from=87 to=113 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=23)
ACD9_199_3
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

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comp(1576..2352)
DNA (777bp) protein (259aa)
PSP1 domain-containing protein
PSP1 domain protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A326_NATTJ (db=UNIREF evalue=6.0e-40 bit_score=167.0 identity=39.83 coverage=89.1891891891892)
coiled-coil (db=Coil db_id=coil from=59 to=80 evalue=NA)
seg (db=Seg db_id=seg from=69 to=88)
ACD9_199_4
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

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comp(2388..2969)
DNA (582bp) protein (194aa)
elongation factor Ts
seg (db=Seg db_id=seg from=110 to=122)
Elongation factor Ts (EF-Ts), dimerisation domain (db=superfamily db_id=SSF54713 from=54 to=193 evalue=9.5e-50 interpro_id=IPR014039 interpro_description=Translation elongation factor EFTs/EF1B, dimerisation GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
ELONGATION FACTOR TS (db=HMMPanther db_id=PTHR11741 from=4 to=193 evalue=1.2e-46 interpro_id=IPR001816 interpro_description=Translation elongation factor EFTs/EF1B GO=Molecular Function: translation elongation factor activity (GO:0003746), Cellular Component: intracellular (GO:0005622), Biological Process: translational elongation (GO:0006414))
ACD9_199_5
GWD2_OD1_38_7, Moranbacteria, Parcubacteria, Bacteria

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comp(3075..3833)
DNA (759bp) protein (253aa)
30S ribosomal protein S2
seg (db=Seg db_id=seg from=159 to=176)
RIBOSOMAL_S2_1 (db=PatternScan db_id=PS00962 from=34 to=45 evalue=0.0 interpro_id=IPR018130 interpro_description=Ribosomal protein S2, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsB_bact: ribosomal protein S2 (db=HMMTigr db_id=TIGR01011 from=31 to=252 evalue=4.9e-87 interpro_id=IPR005706 interpro_description=Ribosomal protein S2, bacteria/mitochondria/plastid GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
ACD9_199_6
ACD9, ACD9, ACD9, ACD9, Parcubacteria, Bacteria

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comp(4229..4492)
DNA (264bp) protein (88aa)
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31 (db=KEGG evalue=1.0e-16 bit_score=88.6 identity=67.21 coverage=67.0454545454545)
seg (db=Seg db_id=seg from=61 to=79)
RIBOSOMAL_L31 (db=PatternScan db_id=PS01143 from=35 to=56 evalue=0.0 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L31: ribosomal protein L31 (db=HMMTigr db_id=TIGR00105 from=1 to=67 evalue=1.6e-28 interpro_id=IPR002150 interpro_description=Ribosomal protein L31 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
OD1_iv Jill Banfield (11/16/12)
ACD9_199_7
ACD9, ACD9, ACD9, ACD9, Parcubacteria, Bacteria

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comp(4605..5678)
DNA (1074bp) protein (358aa)
peptide chain release factor 1; K02835 peptide chain release factor RF-1 (db=KEGG evalue=2.0e-99 bit_score=366.0 identity=54.8 coverage=97.7653631284916)
UPI0001D5B42E related cluster n=1 Tax=unknown RepID=UPI0001D5B42E (db=UNIREF evalue=2.0e-99 bit_score=366.0 identity=54.8 coverage=97.7653631284916)
seg (db=Seg db_id=seg from=202 to=217)
seg (db=Seg db_id=seg from=82 to=102)
ACD9_199_8
ACD9, ACD9, ACD9, ACD9, Parcubacteria, Bacteria

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comp(5715..5831)
DNA (117bp) protein (39aa)

This feature has no annotations

Displaying 8 items

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