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gwf1_scaffold_2454

Alias: WS6_GWF1_33_233_18

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwf1_scaffold_2454_1
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(3..1217)
DNA (1215bp) protein (405aa)
Peptidoglycan glycosyltransferase, penicillin-binding protein 2 {ECO:0000313|EMBL:KKP44430.1}; EC=2.4.1.129 {ECO:0000313|EMBL:KKP44430.1};; Flags: Fragment;; TaxID=1619096 species="Bacteria; candidate
Penicillin-binding protein 2 n=1 Tax=Desulfobacter postgatei 2ac9 RepID=I5B1V8_9DELT
mrdA; penicillin-binding protein 2 MrdA
seg (db=Seg db_id=seg from=57 to=69)
gwf1_scaffold_2454_2

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comp(1225..1719)
DNA (495bp) protein (165aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54893.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
seg (db=Seg db_id=seg from=4 to=28)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=35)
gwf1_scaffold_2454_3
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(1722..2543)
DNA (822bp) protein (274aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44432.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=13 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
coiled-coil (db=Coil db_id=coil from=73 to=94 evalue=NA)
gwf1_scaffold_2454_4

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comp(2558..3613)
DNA (1056bp) protein (352aa)
Rod shape-determining protein MreB n=2 Tax=Thermaerobacter RepID=E6SKD9_THEM7 rbh
Rod shape-determining protein MreB {ECO:0000313|EMBL:KKP54895.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
rod shape-determining protein MreB
(db=HMMPfam db_id=PF06723 from=14 to=341 evalue=1.2e-138 interpro_id=IPR004753 interpro_description=Cell shape determining protein MreB/Mrl GO=Biological Process: cell morphogenesis (GO:0000902))
gwf1_scaffold_2454_5
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists


comp(3687..3902)
DNA (216bp) protein (72aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44434.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
(db=HMMPfam db_id=PF00830 from=3 to=67 evalue=1.3e-09 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L28p-like (db=superfamily db_id=SSF143800 from=1 to=67 evalue=2.7e-11)
gwf1_scaffold_2454_6
GWD1_WS6_35_594, WS6, Bacteria

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3982..4602
DNA (621bp) protein (207aa)
Peptidase M50 n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TR65_ALKMQ
Peptidase M50 {ECO:0000313|EMBL:KKP82270.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
peptidase M50
seg (db=Seg db_id=seg from=100 to=115)
gwf1_scaffold_2454_7
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

5009..5746
DNA (738bp) protein (246aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44436.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=6 to=30)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwf1_scaffold_2454_8
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(5872..6765)
DNA (894bp) protein (298aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44437.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
gwf1_scaffold_2454_9
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

7179..7358
DNA (180bp) protein (60aa)
SecE subunit of protein translocation complex Tax=RIFOXYB1_FULL_WS6_33_15_curated
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
secE_bact: preprotein translocase, SecE sub (db=HMMTigr db_id=TIGR00964 from=4 to=56 evalue=0.00062 interpro_id=IPR005807 interpro_description=SecE subunit of protein translocation complex GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
(db=HMMPfam db_id=PF00584 from=4 to=54 evalue=8.8e-11 interpro_id=IPR001901 interpro_description=Protein translocase complex, SecE/Sec61-gamma subunit GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
gwf1_scaffold_2454_10
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

7384..7929
DNA (546bp) protein (182aa)
Transcription termination/antitermination protein nusG n=2 Tax=Roseiflexus RepID=A5UYI3_ROSS1
NusG antitermination factor, transcriptional antiterminator NusG {ECO:0000313|EMBL:KKP44439.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW20
NusG antitermination factor
no description (db=HMMSmart db_id=SM00739 from=127 to=154 evalue=0.002 interpro_id=IPR005824 interpro_description=KOW)
gwf1_scaffold_2454_11
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists


7948..8373
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3P948_DEFDS
50S ribosomal protein L11, large subunit ribosomal protein L11 {ECO:0000313|EMBL:KKP44440.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011
rplK; 50S ribosomal protein L11
seg (db=Seg db_id=seg from=3 to=14)
gwf1_scaffold_2454_12
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists


8392..9081
DNA (690bp) protein (230aa)
50S ribosomal protein L1 n=1 Tax=Fervidobacterium pennivorans (strain DSM 9078 / Ven5) RepID=H9UCM6_FERPD
50S ribosomal protein L1, large subunit ribosomal protein L1 {ECO:0000313|EMBL:KKP44441.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_G
50S ribosomal protein L1
coiled-coil (db=Coil db_id=coil from=87 to=108 evalue=NA)
gwf1_scaffold_2454_13
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists


9553..10074
DNA (522bp) protein (174aa)
50S ribosomal protein L10 n=2 Tax=Halanaerobium RepID=E3DPY0_HALPG
50S ribosomal protein L10 {ECO:0000313|EMBL:KKP82278.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
50S ribosomal protein L10
(db=HMMPfam db_id=PF00466 from=4 to=101 evalue=2.5e-17 interpro_id=IPR001790 interpro_description=Ribosomal protein L10/acidic P0 GO=Cellular Component: intracellular (GO:0005622), Biological Process: ribosome biogenesis (GO:0042254))
gwf1_scaffold_2454_14
GWD1_WS6_35_594, WS6, Bacteria

Not on your lists


10105..10512
DNA (408bp) protein (136aa)
50S ribosomal protein L7/L12 n=1 Tax=Megasphaera elsdenii DSM 20460 RepID=G0VM61_MEGEL
50S ribosomal protein L7/L12 {ECO:0000313|EMBL:KKP82279.1}; TaxID=1619092 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWD1_35_594.;"
50S ribosomal protein L7/L12
seg (db=Seg db_id=seg from=46 to=65)
gwf1_scaffold_2454_15

Not on your lists

10637..11302
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Rivularia sp. PCC 7116 RepID=K9R6E6_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:KKP54907.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
gwf1_scaffold_2454_16
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

11289..12767
DNA (1479bp) protein (493aa)
Alpha-L-glutamate ligase-related protein n=45 Tax=Pseudomonas RepID=Q4KFK7_PSEF5
Alpha-L-glutamate ligase {ECO:0000313|EMBL:KKP44445.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
alpha-L-glutamate ligase
(db=HMMPfam db_id=PF08443 from=241 to=285 evalue=1.7e-06 interpro_id=IPR013651 interpro_description=ATP-grasp fold, RimK-type)
gwf1_scaffold_2454_17
RIFOXYB1_FULL_WS6_33_15_curated, Dojkabacteria, Bacteria

Not on your lists

12785..13765
DNA (981bp) protein (327aa)
cyanophycin synthetase; K03802 cyanophycin synthetase [EC:6.-.-.-] Tax=RIFOXYB1_FULL_WS6_33_15_curated
Cyanophycin synthetase n=1 Tax=Clostridium colicanis 209318 RepID=N9XYP2_9CLOT
cyanophycin synthetase
seg (db=Seg db_id=seg from=54 to=65)
gwf1_scaffold_2454_18
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

13782..15476
DNA (1695bp) protein (565aa)
Cyanophycin synthetase, cyanophycin synthetase {ECO:0000313|EMBL:KKP44447.1}; EC=6.-.-.- {ECO:0000313|EMBL:KKP44447.1};; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate di
cphA; cyanophycin synthetase (EC:6.-.-.-)
Cyanophycin synthetase n=1 Tax=Synechococcus sp. (strain JA-2-3B'a(2-13)) RepID=Q2JMY7_SYNJB
seg (db=Seg db_id=seg from=542 to=562)
gwf1_scaffold_2454_19
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

15586..16377
DNA (792bp) protein (264aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44448.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=33 to=47)
RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN (db=HMMPanther db_id=PTHR21621 from=149 to=223 evalue=0.00015)
(db=HMMPfam db_id=PF08443 from=66 to=258 evalue=1.8e-13 interpro_id=IPR013651 interpro_description=ATP-grasp fold, RimK-type)
gwf1_scaffold_2454_20

Not on your lists

comp(16374..17504)
DNA (1131bp) protein (377aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54912.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
(db=HMMPfam db_id=PF08014 from=30 to=358 evalue=2.9e-32 interpro_id=IPR012548 interpro_description=Protein of unknown function DUF1704)
gwf1_scaffold_2454_21
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(17542..18558)
DNA (1017bp) protein (339aa)
Cell shape determining protein, MreB/Mrl family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRE1_9FIRM rbh
MreB/Mrl family cell shape determining protein, rod shape-determining protein MreB {ECO:0000313|EMBL:KKP44450.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division
MreB/Mrl family cell shape determining protein
seg (db=Seg db_id=seg from=129 to=142)
gwf1_scaffold_2454_22

Not on your lists

18621..20198
DNA (1578bp) protein (526aa)
WD40-domain containing protein n=1 Tax=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) RepID=C5A5G0_THEGJ
WD40-domain containing protein {ECO:0000313|EMBL:KKP54914.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
WD40-domain containing protein
seg (db=Seg db_id=seg from=293 to=304)
gwf1_scaffold_2454_23

Not on your lists

comp(20202..21809)
DNA (1608bp) protein (536aa)
hypothetical protein cdiviTM7_00321 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25AF
Uncharacterized protein {ECO:0000313|EMBL:KKP54915.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
hypothetical protein
seg (db=Seg db_id=seg from=297 to=310)
gwf1_scaffold_2454_24

Not on your lists

comp(21934..22137)
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP54916.1}; TaxID=1619088 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWB1_33_6.;"
gwf1_scaffold_2454_25
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

comp(22124..22519)
DNA (396bp) protein (132aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP44454.1}; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacterium GW2011_GWF1_33_233.;"
seg (db=Seg db_id=seg from=62 to=77)
transmembrane_regions (db=TMHMM db_id=tmhmm from=62 to=84)
gwf1_scaffold_2454_26
WS6_GWF1_33_233, WS6, Bacteria

Not on your lists

22582..25278
DNA (2697bp) protein (899aa)
UvrABC system protein A n=8 Tax=Caldicellulosiruptor RepID=D9TK84_CALOO rbh
Excinuclease ABC subunit A, excinuclease ABC subunit A {ECO:0000313|EMBL:KKP44455.1}; Flags: Fragment;; TaxID=1619096 species="Bacteria; candidate division WS6.;" source="candidate division WS6 bacter
excinuclease ABC subunit A
seg (db=Seg db_id=seg from=747 to=764)
Displaying 26 items

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