ggKbase home page

S_p1_S3_coassembly_k141_304868

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_304868_1
BJP_IG2158_Thermoplasmatales_53_16, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(91..447)
DNA (357bp) protein (119aa)
Translation initiation factor 2 subunit alpha Tax=Aciduliprofundum sp. (strain MAR08-339) RepID=L0HKS6_ACIS0
translation initiation factor 2, alpha subunit (eIF-2alpha)
Tax=BJP_IG2158_Thermoplasmatales_53_16
S_p1_S3_coassembly_k141_304868_2
R_OD1_Campbellbacteria_35_12, Campbellbacteria, Parcubacteria, Bacteria

Not on your lists

506..1003
DNA (498bp) protein (166aa)
isopentenyl-diphosphate delta-isomerase (EC:5.3.3.2)
Nudix hydrolase, putative bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
Tax=RIFCSPLOWO2_02_OD1_Campbellbacteria_35_12_curated
S_p1_S3_coassembly_k141_304868_3

Not on your lists

comp(1005..1193)
DNA (189bp) protein (63aa)
30S ribosomal protein S27e Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EEZ2_9EURY bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S27e
30S ribosomal protein S27e {ECO:0000256|HAMAP-Rule:MF_00371}; species="Archaea.;" source="archaeon GW2011_AR20.;"
S_p1_S3_coassembly_k141_304868_4

Not on your lists

comp(1196..1489)
DNA (294bp) protein (98aa)
50S ribosomal protein L44e; K02929 large subunit ribosomal protein L44e bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
50S ribosomal protein L44e {ECO:0000256|HAMAP-Rule:MF_01476}; species="Archaea.;" source="archaeon GW2011_AR5.;"
rpl44e; 50S ribosomal protein L44e
S_p1_S3_coassembly_k141_304868_5
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

Not on your lists

1877..4192
DNA (2316bp) protein (772aa)
dolichyl-diphosphooligosaccharide--protein glycotransferase (EC:2.4.1.119)
Putative Oligosaccharyl transferase STT3 subunit Tax=uncultured marine microorganism HF4000_ANIW141K23 RepID=B3T5S1_9ZZZZ
Tax=RBG_16_Micrarchaeota_36_9_curated
S_p1_S3_coassembly_k141_304868_6
Stomatobaculum longum, Stomatobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4173..5339)
DNA (1167bp) protein (389aa)
Uncharacterized protein Tax=Stomatobaculum longum RepID=H1HT54_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO17175.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Stomatobaculum.;" source="Stomatobaculum longum.;"
family 2 glycosyl transferase
S_p1_S3_coassembly_k141_304868_7

Not on your lists

comp(5349..5690)
DNA (342bp) protein (114aa)
Putative methyltransferase {ECO:0000313|EMBL:CEG11691.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="groundwater metagenome.;"
C-methyltransferase bin=GWC2_Alphaproteobacteria_42_16 species=Crinalium epipsammum genus=Crinalium taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
C-methyltransferase
Displaying 7 items

View Taxonomy