ggKbase home page

S_p1_S3_coassembly_k141_1895709

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p1_S3_coassembly_k141_1895709_1
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..3554
DNA (3552bp) protein (1184aa)
Uncharacterized protein {ECO:0000313|EMBL:KHF24801.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
PKD domain containing protein bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
PKD domain-containing protein
S_p1_S3_coassembly_k141_1895709_2
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

3598..4749
DNA (1152bp) protein (384aa)
hypothetical protein
id=5103139 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
S_p1_S3_coassembly_k141_1895709_3
unknown

Not on your lists

4754..6142
DNA (1389bp) protein (463aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1895709_4
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

6139..7050
DNA (912bp) protein (304aa)
hypothetical protein
id=5103141 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
S_p1_S3_coassembly_k141_1895709_5
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

7091..8014
DNA (924bp) protein (308aa)
hypothetical protein
id=5103142 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
S_p1_S3_coassembly_k141_1895709_6
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

8045..9286
DNA (1242bp) protein (414aa)
PHP domain protein Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E0A1_DICTD bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
PHP protein
Tax=AR20
S_p1_S3_coassembly_k141_1895709_7
unknown

Not on your lists

9337..10386
DNA (1050bp) protein (350aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1895709_8
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(10387..11154)
DNA (768bp) protein (256aa)
Uncharacterized protein Tax=Methanobacterium RepID=K2QFB8_METFO bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Tax=AR20
S_p1_S3_coassembly_k141_1895709_9

Not on your lists

comp(11144..11311)
DNA (168bp) protein (56aa)
H/ACA RNA-protein complex component Nop10p; K11130 H/ACA ribonucleoprotein complex subunit 3 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Ribosome biogenesis protein Nop10 {ECO:0000256|HAMAP-Rule:MF_00803}; species="Archaea.;" source="archaeon GW2011_AR18.;"
RNA-binding protein Nop10p
S_p1_S3_coassembly_k141_1895709_10
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(11308..12075)
DNA (768bp) protein (256aa)
Translation initiation factor 2 subunit alpha Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IFN2_ACIB4 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Translation initiation factor 2 subunit alpha
Tax=AR20
S_p1_S3_coassembly_k141_1895709_11
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(12078..12257)
DNA (180bp) protein (60aa)
30S ribosomal protein S27e Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EEZ2_9EURY bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S27e
Tax=AR20
S_p1_S3_coassembly_k141_1895709_12

Not on your lists

comp(12254..12574)
DNA (321bp) protein (107aa)
LSU ribosomal protein L44E Tax=nanoarchaeote Nst1 RepID=R1G2S0_9ARCH bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
LSU ribosomal protein L44E
LSU ribosomal protein L44E {ECO:0000313|EMBL:AJF62429.1}; species="Archaea.;" source="archaeon GW2011_AR20.;"
S_p1_S3_coassembly_k141_1895709_13
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(12571..13167)
DNA (597bp) protein (199aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CUK4_9ARCH bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Tax=AR20
S_p1_S3_coassembly_k141_1895709_14

Not on your lists

13214..14215
DNA (1002bp) protein (334aa)
tRNA pseudouridine synthase D TruD; K06176 tRNA pseudouridine13 synthase [EC:5.4.99.27] bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
tRNA pseudouridine13 synthase {ECO:0000313|EMBL:KHO53366.1}; EC=5.4.99.27 {ECO:0000313|EMBL:KHO53366.1};; species="Archaea.;" source="archaeon GW2011_AR18.;"
tRNA pseudouridine synthase D TruD
S_p1_S3_coassembly_k141_1895709_15
R_OD1_Jorgensenbacteria_45_25b, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

comp(14153..14782)
DNA (630bp) protein (210aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Jorgensenbacteria_45_25b_curated
S_p1_S3_coassembly_k141_1895709_16

Not on your lists

14871..16067
DNA (1197bp) protein (399aa)
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; species="Archaea.;" source="archaeon GW2011_AR17.;"
ftsY; signal recognition particle receptor FtsY; K03110 fused signal recognition particle receptor bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Signal recognition particle GTPase
S_p1_S3_coassembly_k141_1895709_17
GWC2_OD1_38_7, Parcubacteria, Bacteria

Not on your lists

comp(16059..16655)
DNA (597bp) protein (199aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ80827.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_38_7.;"
Uncharacterized protein (Fragment) bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
S_p1_S3_coassembly_k141_1895709_18
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists


16692..18047
DNA (1356bp) protein (452aa)
signal recognition particle protein Srp54; K03106 signal recognition particle subunit SRP54 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
SRP54-type protein, GTPase protein
Tax=AR18
S_p1_S3_coassembly_k141_1895709_19
unknown

Not on your lists

18049..18312
DNA (264bp) protein (88aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1895709_20

Not on your lists

18343..18939
DNA (597bp) protein (199aa)
hypothetical protein Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037BC5F7
Uncharacterized protein {ECO:0000313|EMBL:KKK79956.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
S_p1_S3_coassembly_k141_1895709_21
unknown

Not on your lists

18936..19046
DNA (111bp) protein (37aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1895709_22

Not on your lists

19072..19677
DNA (606bp) protein (202aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003612830
Uncharacterized protein {ECO:0000313|EMBL:KKS91510.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_43_12.;"
adenylate cyclase
S_p1_S3_coassembly_k141_1895709_23
RBG_13_OP11_40_7b_curated, Microgenomates, Bacteria

Not on your lists

19881..20126
DNA (246bp) protein (82aa)
Translation elongation factor-like protein Tax=Dehalococcoides mccartyi RepID=D2BID7_DEHSV bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Translation elongation factor-like protein
Tax=RBG_13_OP11_40_7b_curated
S_p1_S3_coassembly_k141_1895709_24
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists


20231..20686
DNA (456bp) protein (152aa)
30S ribosomal protein S15/S13e Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L6T6_KORCO bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S15/S13e
Tax=AR20
S_p1_S3_coassembly_k141_1895709_25
AR20, Woesearchaeaota, DPANN, Archaea

Not on your lists


20884..21453
DNA (570bp) protein (190aa)
SSU ribosomal protein S3AE Tax=nanoarchaeote Nst1 RepID=R1E4Q5_9ARCH bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
SSU ribosomal protein S3AE
Tax=AR20
S_p1_S3_coassembly_k141_1895709_26
unknown

Not on your lists

comp(21479..21625)
DNA (147bp) protein (49aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1895709_trna_1
unknown

Not on your lists

21693..21792
DNA (100bp)
transferRNA Pseudo
S_p1_S3_coassembly_k141_1895709_27
unknown

Not on your lists

comp(21796..21981)
DNA (186bp) protein (62aa)

This feature has no annotations

S_p1_S3_coassembly_k141_1895709_trna_2
unknown

Not on your lists

22001..22086
DNA (86bp)
transferRNA Val
S_p1_S3_coassembly_k141_1895709_28
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

22094..22861
DNA (768bp) protein (256aa)
Tax=AR9
Displaying items 1-30 of 38 in total

View Taxonomy