ggKbase home page

S_p2_S4_coassembly_k141_3103078

Search features with annotation key words

Displaying items 1-30 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p2_S4_coassembly_k141_3103078_1
R_RIF_OD1_03_48_11, RIF-OD1-3, Parcubacteria, Bacteria

Not on your lists

comp(231..1100)
DNA (870bp) protein (290aa)
hydrolase TatD Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B325E5
TatD family hydrolase
Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_03_48_11_curated
S_p2_S4_coassembly_k141_3103078_2
GWA2_OD1_39_24, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1351..1857)
DNA (507bp) protein (169aa)
Colicin V production protein {ECO:0000313|EMBL:KKR14872.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Falkowbacteria) bacterium GW2011_GWA2_39_24.;"
Colicin V production protein bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
putative membrane protein, required for colicin V production
S_p2_S4_coassembly_k141_3103078_3
R_OD1_Wolfebacteria_47_17b, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(1861..2289)
DNA (429bp) protein (143aa)
seg 105..121 bin=ACD38 species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=ACD38 organism_group=OP11 (Microgenomates) organism_desc=OP11
Tax=RIFCSPLOWO2_01_FULL_OD1_Wolfebacteria_47_17b_curated
S_p2_S4_coassembly_k141_3103078_4
R_SM2F11_52_17, SM2F11, Bacteria

Not on your lists

comp(2295..2495)
DNA (201bp) protein (67aa)
id=44062 bin=ACD38 species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=ACD38 organism_group=OP11 (Microgenomates) organism_desc=OP11
Tax=RIFCSPHIGHO2_01_SM2F11_52_17_curated
S_p2_S4_coassembly_k141_3103078_5
R_OD1_Uhrbacteria_57_19, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2600..5728)
DNA (3129bp) protein (1043aa)
Adenine specific DNA methyltransferase bin=GWF2_Ignavibacteria_35_20 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
Adenine specific DNA methyltransferase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Uhrbacteria_57_19_curated
S_p2_S4_coassembly_k141_3103078_6
RBG_19FT_COMBO_OP11_43_10_curated, Microgenomates, Bacteria

Not on your lists


comp(5827..7245)
DNA (1419bp) protein (473aa)
Methionine--tRNA ligase bin=GWE2_OD1_46_68 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=GWE2_OD1_46_68 organism_group=OD1 (Parcubacteria)
methionyl-tRNA synthetase
Tax=RBG_19FT_COMBO_OP11_43_10_curated
S_p2_S4_coassembly_k141_3103078_7
Parcubacteria bacterium GW2011_GWA2_52_8, Parcubacteria, Bacteria

Not on your lists

comp(7364..7756)
DNA (393bp) protein (131aa)
Uncharacterized protein Tax=Pantoea sp. AS-PWVM4 RepID=U2NV30_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KKW28719.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_52_8.;"
hypothetical protein
S_p2_S4_coassembly_k141_3103078_8
R_OD1_Falkowbacteria_44_11, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(7992..8681)
DNA (690bp) protein (230aa)
putative methyltransferase; K07056 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Falkowbacteria_44_11_curated
S_p2_S4_coassembly_k141_3103078_9
RHI_RIF_OD1_01_48_17, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(8778..9842)
DNA (1065bp) protein (355aa)
hypothetical protein bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_01_48_17_curated
S_p2_S4_coassembly_k141_3103078_10
R_RIF_OD1_01_42_19, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(9832..10854)
DNA (1023bp) protein (341aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2CBJ2_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_01_42_19_curated
S_p2_S4_coassembly_k141_3103078_11
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

Not on your lists

comp(10859..12136)
DNA (1278bp) protein (426aa)
Peptidase M16 protein Tax=uncultured bacterium RepID=K2C094_9BACT
Processing protease {ECO:0000313|EMBL:KKW01866.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
peptidase M16 domain-containing protein
S_p2_S4_coassembly_k141_3103078_12

Not on your lists

comp(12238..14049)
DNA (1812bp) protein (604aa)
Uncharacterized protein (Fragment) Tax=uncultured bacterium RepID=K1Z9H5_9BACT
Marine sediment metagenome DNA, contig: S01H4_C00353 {ECO:0000313|EMBL:GAG71072.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
S_p2_S4_coassembly_k141_3103078_13
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14070..15578)
DNA (1509bp) protein (503aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycine--tRNA ligase; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
Glycine--tRNA ligase Tax=Acidaminococcus sp. CAG:917 RepID=R7K8H7_9FIRM
glyS1; glycyl-tRNA synthetase
S_p2_S4_coassembly_k141_3103078_14
Desulfococcus multivorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15768..16778
DNA (1011bp) protein (337aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus multivorans DSM 2059.;"
Aspartate carbamoyltransferase Tax=Desulfococcus multivorans DSM 2059 RepID=S7UY81_DESML
pyrB; aspartate carbamoyltransferase
S_p2_S4_coassembly_k141_3103078_15
unknown

Not on your lists

16790..17215
DNA (426bp) protein (142aa)

This feature has no annotations

S_p2_S4_coassembly_k141_3103078_16
Parcubacteria bacterium GW2011_GWC2_49_9, Parcubacteria, Bacteria

Not on your lists

comp(17382..19958)
DNA (2577bp) protein (859aa)
hypothetical protein Tax=candidate division OD1 bacterium SCGC AAA011-J16 RepID=UPI00036AD322
ATPase with chaperone activity, ATP-binding subunit {ECO:0000313|EMBL:KKW15541.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_49_9.;"
endopeptidase Clp ATP-binding chain
S_p2_S4_coassembly_k141_3103078_17
GWC2_OD1_39_14, Parcubacteria, Bacteria

Not on your lists

comp(20153..20536)
DNA (384bp) protein (128aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2A282_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKR07856.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_39_14.;"
S_p2_S4_coassembly_k141_3103078_18
unknown

Not on your lists

comp(20647..20868)
DNA (222bp) protein (74aa)

This feature has no annotations

S_p2_S4_coassembly_k141_3103078_19
unknown

Not on your lists

21053..21751
DNA (699bp) protein (233aa)

This feature has no annotations

S_p2_S4_coassembly_k141_3103078_20
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

Not on your lists

comp(21785..23695)
DNA (1911bp) protein (637aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW01848.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_48_9.;"
transmembrane_regions bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
S_p2_S4_coassembly_k141_3103078_21
R_RIF_OD1_07_48_16, RIF-OD1-7, Parcubacteria, Bacteria

Not on your lists

comp(23728..24375)
DNA (648bp) protein (216aa)
DNA repair protein RecO Tax=Roseiflexus sp. (strain RS-1) RepID=RECO_ROSS1
DNA repair protein RecO
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_07_48_16_curated
S_p2_S4_coassembly_k141_3103078_22
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(24381..25313)
DNA (933bp) protein (311aa)
hypothetical protein Tax=Longispora albida RepID=UPI00038264D3
alkaline phosphatase
Tax=RBG_16_Chloroflexi_63_12_curated
S_p2_S4_coassembly_k141_3103078_23
R_OD1_57_28, Parcubacteria, Bacteria

Not on your lists

comp(25777..26061)
DNA (285bp) protein (95aa)
Uncharacterized protein Tax=Leptospira sp. B5-022 RepID=M6D7J1_9LEPT
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_57_28_curated
S_p2_S4_coassembly_k141_3103078_24
GWB1_OD1_49_12, Parcubacteria, Bacteria

Not on your lists

comp(26168..29722)
DNA (3555bp) protein (1185aa)
ileS; Isoleucine-tRNA ligase (EC:6.1.1.5)
Isoleucyl-tRNA synthetase Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWD3_9BACT
Tax=GWB1_OD1_49_12
S_p2_S4_coassembly_k141_3103078_25
RBG_16_RIF_OP11_02_41_13_curated, RIF-OP11-2, Microgenomates, Bacteria

Not on your lists

comp(30387..30956)
DNA (570bp) protein (190aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2AK47_9BACT
adenylyl cyclase CyaB
Tax=RBG_16_RIF_OP11_02_41_13_curated
S_p2_S4_coassembly_k141_3103078_26
Parcubacteria bacterium GW2011_GWC2_49_9, Parcubacteria, Bacteria

Not on your lists

comp(30990..32135)
DNA (1146bp) protein (382aa)
Similar to mannosyltransferase B Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1X2_9BACT bin=ACD41 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=ACD41 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Mannosyltransferase B-like protein {ECO:0000313|EMBL:KKW15733.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_49_9.;"
group 1 glycosyl transferase
S_p2_S4_coassembly_k141_3103078_27
R_RIF_OD1_01_48_11, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists


comp(32270..33898)
DNA (1629bp) protein (543aa)
bao:BAMF_3568 argS; arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] bin=ACD41 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=ACD41 organism_group=OD1 (Parcubacteria) organism_desc=OD1
arginyl-tRNA synthetase (EC:6.1.1.19)
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_01_48_11_curated
S_p2_S4_coassembly_k141_3103078_28
unknown

Not on your lists

comp(34033..34413)
DNA (381bp) protein (127aa)

This feature has no annotations

S_p2_S4_coassembly_k141_3103078_29
unknown

Not on your lists

comp(34721..34966)
DNA (246bp) protein (82aa)

This feature has no annotations

S_p2_S4_coassembly_k141_3103078_30
CG_CPR14_01, CG_CPR14, Bacteria

Not on your lists

comp(35082..35396)
DNA (315bp) protein (105aa)
TrpR protein bin=GWA1_ZB2_49_26 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Trp operon repressor family
Tax=CG_CPR14_01
Displaying items 1-30 of 110 in total

View Taxonomy