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S_p2_S4_coassembly_k141_1156575

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S_p2_S4_coassembly_k141_1156575_1
AR10, Diapherotrites, DPANN, Archaea

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72..1988
DNA (1917bp) protein (639aa)
hypothetical protein
GI15642 gene product from transcript GI15642-RA bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p2_S4_coassembly_k141_1156575_2
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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2281..3660
DNA (1380bp) protein (460aa)
Glycosyl hydrolase, BNR repeat Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RLW3_MOOTA
BNR repeat-containing glycosyl hydrolase
Glycosyl hydrolase, BNR repeat {ECO:0000313|EMBL:ABC18576.1}; Flags: Precursor;; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella thermoacetica (strain ATCC 39073).;"
S_p2_S4_coassembly_k141_1156575_3
unknown

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3826..4050
DNA (225bp) protein (75aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1156575_4
unknown

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4057..6717
DNA (2661bp) protein (887aa)

This feature has no annotations

S_p2_S4_coassembly_k141_1156575_5

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7036..8064
DNA (1029bp) protein (343aa)
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
large subunit ribosomal protein L3
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p2_S4_coassembly_k141_1156575_6

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8061..8891
DNA (831bp) protein (277aa)
50S ribosomal protein L4P {ECO:0000313|EMBL:AJS12060.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
large subunit ribosomal protein L4e
LSU ribosomal protein l4p; K02930 large subunit ribosomal protein L4e bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p2_S4_coassembly_k141_1156575_7

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8897..9502
DNA (606bp) protein (202aa)
large subunit ribosomal protein L23
50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L23P {ECO:0000256|HAMAP-Rule:MF_01369}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p2_S4_coassembly_k141_1156575_8

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9524..10246
DNA (723bp) protein (241aa)
50S ribosomal protein L2P {ECO:0000313|EMBL:AJS12061.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
large subunit ribosomal protein L2
LSU ribosomal protein l2p; K02886 large subunit ribosomal protein L2 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p2_S4_coassembly_k141_1156575_9

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10405..10815
DNA (411bp) protein (137aa)
30S ribosomal protein S19P Tax=Thermococcus litoralis DSM 5473 RepID=H3ZNM4_THELI
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps19p; 30S ribosomal protein S19
S_p2_S4_coassembly_k141_1156575_10

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10812..11297
DNA (486bp) protein (162aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22P, large subunit ribosomal protein L22
rpl22p; 50S ribosomal protein L22P; K02890 large subunit ribosomal protein L22 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p2_S4_coassembly_k141_1156575_11

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11298..12212
DNA (915bp) protein (305aa)
small subunit ribosomal protein S3
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Small subunit ribosomal protein S3 {ECO:0000313|EMBL:AJF60347.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p2_S4_coassembly_k141_1156575_12
AR10, Diapherotrites, DPANN, Archaea

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12209..12463
DNA (255bp) protein (85aa)
hypothetical protein
Ribosomal protein L29 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
S_p2_S4_coassembly_k141_1156575_13

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12575..12877
DNA (303bp) protein (101aa)
translation initiation factor 1
translation initiation factor 1 (eif-1/sui1); K03113 translation initiation factor 1 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Protein translation factor SUI1 homolog {ECO:0000256|PIRNR:PIRNR037511}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p2_S4_coassembly_k141_1156575_14

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12870..13175
DNA (306bp) protein (102aa)
ribonuclease P protein subunit POP4 (EC:3.1.26.5)
ribonuclease P, Rpp29; K03538 ribonuclease P protein subunit POP4 [EC:3.1.26.5] bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Ribonuclease P protein component 1 {ECO:0000256|HAMAP-Rule:MF_00754}; Short=RNase P component 1 {ECO:0000256|HAMAP-Rule:MF_00754};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00754};; Rpp29 {ECO:0000256|HAMAP-Rule:MF_00754}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p2_S4_coassembly_k141_1156575_15

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13153..13659
DNA (507bp) protein (169aa)
30S ribosomal protein S17P {ECO:0000256|HAMAP-Rule:MF_01345}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
small subunit ribosomal protein S17
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p2_S4_coassembly_k141_1156575_16

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13656..14054
DNA (399bp) protein (133aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L14, large subunit ribosomal protein L14
rpl14p; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p2_S4_coassembly_k141_1156575_17

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14056..14499
DNA (444bp) protein (148aa)
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
large subunit ribosomal protein L24
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p2_S4_coassembly_k141_1156575_18

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14530..15267
DNA (738bp) protein (246aa)
small subunit ribosomal protein S4e
30S ribosomal protein S4; K02987 small subunit ribosomal protein S4e bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p2_S4_coassembly_k141_1156575_19

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15291..15902
DNA (612bp) protein (204aa)
50S ribosomal protein L5P {ECO:0000313|EMBL:AJS12067.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
large subunit ribosomal protein L5
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p2_S4_coassembly_k141_1156575_20
Methanosphaera stadtmanae, Methanosphaera, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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15899..16057
DNA (159bp) protein (53aa)
30S ribosomal protein S14 type Z Tax=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) RepID=RS14Z_METST
rps14P; 30S ribosomal protein S14
30S ribosomal protein S14 type Z {ECO:0000255|HAMAP-Rule:MF_01364}; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanosphaera.;" source="Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 /; MCB-3).;"
S_p2_S4_coassembly_k141_1156575_21

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16080..16472
DNA (393bp) protein (131aa)
30S ribosomal protein S8 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BD85_METIK
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8
S_p2_S4_coassembly_k141_1156575_22

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16483..17022
DNA (540bp) protein (180aa)
50S ribosomal protein L6 Tax=Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) RepID=C7P7G7_METFA
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS12069.1}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl6p; 50S ribosomal protein L6
S_p2_S4_coassembly_k141_1156575_23

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17036..17899
DNA (864bp) protein (288aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO55770.1}; species="Archaea.;" source="archaeon GW2011_AR21.;"
large subunit ribosomal protein L32e
50S ribosomal protein L32e; K02912 large subunit ribosomal protein L32e bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p2_S4_coassembly_k141_1156575_24

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17930..18367
DNA (438bp) protein (146aa)
50S ribosomal protein L19e, large subunit ribosomal protein L19e
rpl19e; 50S ribosomal protein L19e; K02885 large subunit ribosomal protein L19e bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L19e, large subunit ribosomal protein L19e {ECO:0000313|EMBL:AJF60360.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p2_S4_coassembly_k141_1156575_25

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18364..18870
DNA (507bp) protein (169aa)
50S ribosomal protein L18P Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IBI0_ACIB4
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L18
S_p2_S4_coassembly_k141_1156575_26

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18875..19585
DNA (711bp) protein (237aa)
30S ribosomal protein S5, small subunit ribosomal protein S5
rps5p; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
30S ribosomal protein S5, small subunit ribosomal protein S5 {ECO:0000313|EMBL:AJF60362.1}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p2_S4_coassembly_k141_1156575_27

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19582..20043
DNA (462bp) protein (154aa)
50S ribosomal protein L30P {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00081760}; species="Archaea.;" source="archaeon GW2011_AR21.;"
50S ribosomal protein L30P, large subunit ribosomal protein L30
rpl30p; 50S ribosomal protein L30P; K02907 large subunit ribosomal protein L30 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p2_S4_coassembly_k141_1156575_28

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20083..20562
DNA (480bp) protein (160aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L15, large subunit ribosomal protein L15
rpl15p; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
S_p2_S4_coassembly_k141_1156575_29

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20609..22027
DNA (1419bp) protein (473aa)
preprotein translocase subunit SecY
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; Protein transport protein SEC61 subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01465}; species="Archaea.;" source="archaeon GW2011_AR10.;"
S_p2_S4_coassembly_k141_1156575_30
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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22187..22432
DNA (246bp) protein (82aa)
Uncharacterized protein Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZRB2_OPITP
Uncharacterized protein {ECO:0000313|EMBL:KFE66319.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
Displaying 30 items

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