ggKbase home page

SR2-18-S2p5_coassembly_scaffold_249170

Search features with annotation key words

Displaying items 1-30 of 130 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR2-18-S2p5_coassembly_scaffold_249170_1
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(204..1541)
DNA (1338bp) protein (446aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EN78_9CHLR
SR2-18-S2p5_coassembly_scaffold_249170_2
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(1622..2260)
DNA (639bp) protein (213aa)
ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase n=1 Tax=Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) RepID=F0S276_DESTD
Tax=CG_Anaero_02
SR2-18-S2p5_coassembly_scaffold_249170_3
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(2325..3518)
DNA (1194bp) protein (398aa)
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TDN5_HELMI
hisS; histidyl-tRNA synthetase
Tax=CG_Anaero_02
SR2-18-S2p5_coassembly_scaffold_249170_4
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

3733..4101
DNA (369bp) protein (123aa)
Putative uncharacterized protein n=1 Tax=Moorea producens 3L RepID=F4XTM0_9CYAN
protein of unknown function DUF433
Tax=RBG_13_Planctomycetes_63_9_curated
SR2-18-S2p5_coassembly_scaffold_249170_5
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

4512..5519
DNA (1008bp) protein (336aa)
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5V0J3_ROSS1
Tax=RBG_16_Chloroflexi_57_9_curated
SR2-18-S2p5_coassembly_scaffold_249170_6
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

5585..6328
DNA (744bp) protein (248aa)
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase {ECO:0000255|HAMAP-Rule:MF_00082}; EC=2.7.2.8 {ECO:0000255|HAMAP-Rule:MF_00082};; N-acetyl-L-glutamate 5-phosphotransferase {ECO:0000255|HAMAP-Rule:MF_00082}; NAG kinase {ECO:0000255|HAMAP-Rule:MF_00082}; Short=AGK {ECO:0000255|HAMAP-Rule:MF_00082};; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
Acetylglutamate kinase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=ARGB_ROSCS
SR2-18-S2p5_coassembly_scaffold_249170_7
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

6380..7567
DNA (1188bp) protein (396aa)
Acetylornithine aminotransferase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5URK2_ROSS1
acetylornithine and succinylornithine aminotransferase
Tax=CG_Anaero_02
SR2-18-S2p5_coassembly_scaffold_249170_8
Bacillus clausii, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7607..8500
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Bacillus clausii (strain KSM-K16) RepID=Q5WDI4_BACSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD65576.1}; TaxID=66692 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus clausii (strain KSM-K16).;"
SR2-18-S2p5_coassembly_scaffold_249170_9
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

8585..9127
DNA (543bp) protein (181aa)
GCN5-related N-acetyltransferase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NPB4_ROSCS
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABU59410.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
SR2-18-S2p5_coassembly_scaffold_249170_10
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

9189..10451
DNA (1263bp) protein (421aa)
argG; argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase n=1 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N4B4_ANATU
Tax=CG_Anaero_02
SR2-18-S2p5_coassembly_scaffold_249170_11
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

10489..11670
DNA (1182bp) protein (394aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5V0K0_ROSS1
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; Flags: Precursor;; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
SR2-18-S2p5_coassembly_scaffold_249170_12
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

11745..13106
DNA (1362bp) protein (454aa)
Argininosuccinate lyase {ECO:0000255|HAMAP-Rule:MF_00006}; Short=ASAL {ECO:0000255|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000255|HAMAP-Rule:MF_00006};; Arginosuccinase {ECO:0000255|HAMAP-Rule:MF_00006}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
Argininosuccinate lyase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=ARLY_ROSS1
argininosuccinate lyase
SR2-18-S2p5_coassembly_scaffold_249170_13

Not on your lists

comp(13205..14119)
DNA (915bp) protein (305aa)
Cell surface protein n=1 Tax=uncultured bacterium pFosLip RepID=Q1PAE9_9BACT
Cell surface protein {ECO:0000313|EMBL:KKT22518.1}; TaxID=1618875 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_43_8b.;"
SR2-18-S2p5_coassembly_scaffold_249170_14

Not on your lists

comp(14255..15127)
DNA (873bp) protein (291aa)
Conserved repeat domain protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D1R1_METSW
Marine sediment metagenome DNA, contig: S01H1_L08199 {ECO:0000313|EMBL:GAF88838.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SR2-18-S2p5_coassembly_scaffold_249170_15
GWA1_OD1_37_20_partial, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(15272..16216)
DNA (945bp) protein (315aa)
Cell surface protein n=1 Tax=uncultured bacterium pFosLip RepID=Q1PAE9_9BACT
Cell surface protein {ECO:0000313|EMBL:KKQ32201.1}; TaxID=1618729 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA1_37_20.;"
SR2-18-S2p5_coassembly_scaffold_249170_16
RBG_16_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists

16807..18180
DNA (1374bp) protein (458aa)
MatE family transporter id=2312802 bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
MatE family transporter
Tax=RBG_16_Chloroflexi_56_8_curated
SR2-18-S2p5_coassembly_scaffold_249170_17
Microgenomates bacterium GW2011_GWA2_39_19, Microgenomates, Bacteria

Not on your lists

comp(18447..19400)
DNA (954bp) protein (318aa)
RNA methylase, NOL1/NOP2/sun family n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CIL2_THET1
RNA methylase, NOL1/NOP2/sun family {ECO:0000313|EMBL:KKR10855.1}; TaxID=1618498 species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWA2_39_19.;"
RNA methylase
SR2-18-S2p5_coassembly_scaffold_249170_18
unknown

Not on your lists

comp(19406..20044)
DNA (639bp) protein (213aa)

This feature has no annotations

SR2-18-S2p5_coassembly_scaffold_249170_19
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

20542..21636
DNA (1095bp) protein (365aa)
cellulose 1,4-beta-cellobiosidase (EC:3.2.1.91)
Cellulose 1,4-beta-cellobiosidase n=1 Tax=Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) RepID=D9TFH5_CALOO
Putative uncharacterized protein {ECO:0000313|EMBL:CBN58330.1}; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
SR2-18-S2p5_coassembly_scaffold_249170_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(21710..22630)
DNA (921bp) protein (307aa)
UspA domain-containing protein id=3744949 bin=GWC2_Chloroflexi_49_37 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
UspA domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
SR2-18-S2p5_coassembly_scaffold_249170_21
RBG_19FT_COMBO_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(22632..23969)
DNA (1338bp) protein (446aa)
Divalent metal cation transporter MntH n=1 Tax=uncultured bacterium RepID=K1XSS4_9BACT
Mn2+/Fe2+ transporter
Tax=RBG_19FT_COMBO_Chloroflexi_50_10_curated
SR2-18-S2p5_coassembly_scaffold_249170_22
BJP_IG2157_Anaerolineales_55_23, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(24105..25292)
DNA (1188bp) protein (396aa)
Putative metal cation transporter id=3832642 bin=GWB1_Spirochaetes_59_5 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
putative metal cation transporter
Tax=BJP_IG2157_Anaerolineales_55_23
SR2-18-S2p5_coassembly_scaffold_249170_23
RBG_16_Chloroflexi_51_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(25295..26377)
DNA (1083bp) protein (361aa)
Putative oxidoreductase id=3607526 bin=GWA1_Treponema_62_8 species=unknown genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA1_Treponema_62_8 organism_group=Spirochaetes
putative oxidoreductase
Tax=RBG_16_Chloroflexi_51_16_curated
SR2-18-S2p5_coassembly_scaffold_249170_24
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(26399..27124)
DNA (726bp) protein (242aa)
DtxR family iron (metal) dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator id=14431400 bin=bin3_NC10 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin3_NC10 organism_group=NC10
DtxR family iron (metal) dependent repressor
Tax=CSP1_5_NC10
SR2-18-S2p5_coassembly_scaffold_249170_25
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(27362..27784)
DNA (423bp) protein (141aa)
Uncharacterized protein id=4887981 bin=GWC2_Nitrospirae-rel_56_14 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
class I peptide chain release factor
Tax=GWC2_Nitrospirae_57_9_curated
SR2-18-S2p5_coassembly_scaffold_249170_26
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(27817..28695)
DNA (879bp) protein (293aa)
MCP methyltransferase, CheR-type n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NNU9_ROSCS
chemotaxis protein CheR
MCP methyltransferase, CheR-type {ECO:0000313|EMBL:ABU59243.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
SR2-18-S2p5_coassembly_scaffold_249170_27
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(28779..31514)
DNA (2736bp) protein (912aa)
Phosphoenolpyruvate carboxylase id=4688994 bin=GWC2_Methylomirabilis_70_24 species=Rhodopirellula maiorica genus=Rhodopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
phosphoenolpyruvate carboxylase
Tax=GWA2_Rokubacteria_70_23_curated
SR2-18-S2p5_coassembly_scaffold_249170_28
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

Not on your lists

comp(31807..32424)
DNA (618bp) protein (206aa)
Putative uncharacterized protein id=1700692 bin=GWB2_Chloroflexi_54_36 species=uncultured marine microorganism HF4000_APKG5H11 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
excisionase family DNA binding domain-containing protein
Tax=GWB2_Chloroflexi_54_36_curated
SR2-18-S2p5_coassembly_scaffold_249170_29
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

32896..33351
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZY8_CALAS
hypothetical protein
Tax=CG_Anaero_02
SR2-18-S2p5_coassembly_scaffold_249170_30
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(33455..34048)
DNA (594bp) protein (198aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racemifer DSM 44963.;"
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TQS3_9CHLR
Displaying items 1-30 of 130 in total

View Taxonomy