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SR2-18-S2p5_coassembly_scaffold_236604

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Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR2-18-S2p5_coassembly_scaffold_236604_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(580..1350)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DC50_SINAD
dehydrogenase
Uncharacterized protein {ECO:0000313|EMBL:AGA26954.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SR2-18-S2p5_coassembly_scaffold_236604_2
Deinococcus peraridilitoris, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(1366..2382)
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Deinococcus apachensis RepID=UPI000365296E
theronine dehydrogenase-like Zn-dependent dehydrogenase
Theronine dehydrogenase-like Zn-dependent dehydrogenase {ECO:0000313|EMBL:AFZ67526.1}; TaxID=937777 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416; / KR-200).;"
SR2-18-S2p5_coassembly_scaffold_236604_3
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2525..3211)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Paenibacillus sp. PAMC 26794 RepID=UPI00031C9467
Uncharacterized protein {ECO:0000313|EMBL:CCY40523.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
cyclase family protein
SR2-18-S2p5_coassembly_scaffold_236604_4
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3222..4223)
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003639837
ABC transporter permease {ECO:0000313|EMBL:KJS18094.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
ABC transporter permease
SR2-18-S2p5_coassembly_scaffold_236604_5
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4253..5272)
DNA (1020bp) protein (340aa)
UPI0003CE463E related cluster n=1 Tax=unknown RepID=UPI0003CE463E
Putative sugar ABC transporter, permease protein ribose ABC transporter rbsC-like {ECO:0000313|EMBL:CDX12795.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
inner-membrane translocator
SR2-18-S2p5_coassembly_scaffold_236604_6
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5333..6877)
DNA (1545bp) protein (515aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
UPI0003D01D39 related cluster n=1 Tax=unknown RepID=UPI0003D01D39
ABC transporter
SR2-18-S2p5_coassembly_scaffold_236604_7
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6970..8160)
DNA (1191bp) protein (397aa)
Putative sugar ABC transporter, substrate binding protein ribose ABC transporter n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RRJ3_9BRAD
Ribose ABC transporter substrate-binding protein {ECO:0000313|EMBL:KDB01666.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
sugar ABC transporter substrate-binding protein
SR2-18-S2p5_coassembly_scaffold_236604_8
unknown

Not on your lists

comp(8233..8328)
DNA (96bp) protein (32aa)

This feature has no annotations

SR2-18-S2p5_coassembly_scaffold_236604_9
Desulfosporosinus meridiei, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8325..9275)
DNA (951bp) protein (317aa)
transketolase (EC:2.2.1.1)
Transketolase, alpha subunit {ECO:0000313|EMBL:AFQ46334.1}; EC=2.2.1.1 {ECO:0000313|EMBL:AFQ46334.1};; TaxID=768704 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB; 13706 / S10).;"
Transketolase, C-terminal domain protein n=1 Tax=Desulfosporosinus sp. OT RepID=G2FZ57_9FIRM
SR2-18-S2p5_coassembly_scaffold_236604_10
CG_Nitrosp_01, Nitrospirae, Bacteria

Not on your lists

comp(9278..10126)
DNA (849bp) protein (283aa)
Transketolase id=4478338 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
transketolase, beta subunit
Tax=CG_Nitrosp_01
SR2-18-S2p5_coassembly_scaffold_236604_11
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(10175..10951)
DNA (777bp) protein (259aa)
Dehydrogenases with different specificities n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5CY54_PELTS
FabG; dehydrogenases with different specificities
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
SR2-18-S2p5_coassembly_scaffold_236604_12
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

comp(10979..11893)
DNA (915bp) protein (305aa)
2-hydroxy-3-oxopropionate reductase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVA4_RUBXD
2-hydroxy-3-oxopropionate reductase
Tax=RBG_13_Chloroflexi_68_17_curated
SR2-18-S2p5_coassembly_scaffold_236604_13
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

comp(11942..12712)
DNA (771bp) protein (257aa)
Transcriptional regulator n=2 Tax=Pandoraea RepID=V5UC19_9BURK
GntR family transcriptional regulator
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
SR2-18-S2p5_coassembly_scaffold_236604_14
unknown

Not on your lists

13429..13962
DNA (534bp) protein (178aa)

This feature has no annotations

SR2-18-S2p5_coassembly_scaffold_236604_15
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

Not on your lists

13953..14849
DNA (897bp) protein (299aa)
4Fe-4S binding domain protein id=3656172 bin=GWF2_Lentisphaerae_50_93 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
hypothetical protein
Tax=GWF2_Lentisphaerae_50_93_curated
SR2-18-S2p5_coassembly_scaffold_236604_16
RBG_16_Chloroflexi_54_11_curated, Chloroflexi, Bacteria

Not on your lists

15340..15759
DNA (420bp) protein (140aa)
Membrane protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BCM1_9CLOT
hypothetical protein
Tax=RBG_16_Chloroflexi_54_11_curated
SR2-18-S2p5_coassembly_scaffold_236604_17
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

15812..16516
DNA (705bp) protein (235aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IB49_9CHLR
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EFO81534.1}; TaxID=765420 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
two component transcriptional regulator
SR2-18-S2p5_coassembly_scaffold_236604_18
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

16537..17904
DNA (1368bp) protein (456aa)
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UZN7_ROSS1
SR2-18-S2p5_coassembly_scaffold_236604_19
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(17993..18661)
DNA (669bp) protein (223aa)
Oligopeptide ABC transporter, solute-binding protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8THB6_METAC
oppA; oligopeptide ABC transporter substrate-binding protein
Tax=RBG_16_RIF_CHLX_72_14_curated
SR2-18-S2p5_coassembly_scaffold_236604_20
unknown

Not on your lists

18669..19025
DNA (357bp) protein (119aa)

This feature has no annotations

SR2-18-S2p5_coassembly_scaffold_236604_21
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(18946..19437)
DNA (492bp) protein (164aa)
ABC transporter permease id=24505193 bin=RBG_19FT_COMBO_GAL15_69_19 species=Brevibacillus brevis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
dppC; dipeptide ABC transporter permease
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
SR2-18-S2p5_coassembly_scaffold_236604_22
Methanococcoides methylutens, Methanococcoides, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(19434..19709)
DNA (276bp) protein (92aa)
Protein with Tungsten formylmethanofuran dehydrogenase, subunit E-like domain n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12WU4_METBU
Protein containing a metal-binding domain shared with formylmethanofuran dehydrogenase subunit E {ECO:0000313|EMBL:AKB85685.1}; TaxID=1434104 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides.;" source="Methanococcoides methylutens MM1.;"
formylmethanofuran dehydrogenase, subunit E
SR2-18-S2p5_coassembly_scaffold_236604_23
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(19878..20030)
DNA (153bp) protein (51aa)
Formylmethanofuran dehydrogenase subunit E region n=1 Tax=Aminobacterium colombiense (strain DSM 12261 / ALA-1) RepID=D5ECC2_AMICL
formylmethanofuran dehydrogenase subunit E
Tax=RBG_16_RIF_CHLX_72_14_curated
SR2-18-S2p5_coassembly_scaffold_236604_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20060..20959)
DNA (900bp) protein (300aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q211A8_RHOPB
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABD89028.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SR2-18-S2p5_coassembly_scaffold_236604_25
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(21055..22017)
DNA (963bp) protein (321aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z9H3_9BRAD
binding-protein-dependent transport systems inner membrane component
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
SR2-18-S2p5_coassembly_scaffold_236604_26
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(22115..23824)
DNA (1710bp) protein (570aa)
ABC transporter substrate-binding protein id=14628351 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin8_Chloro organism_group=Chloroflexi
peptide ABC transporter substrate-binding protein
Tax=CSP1_4_Chloroflexi
SR2-18-S2p5_coassembly_scaffold_236604_27
Desulfobacca acetoxidans, Desulfobacca, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23892..24371)
DNA (480bp) protein (160aa)
CODH nickel-insertion accessory protein n=1 Tax=gamma proteobacterium HIMB30 RepID=UPI000262CBAE
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:AEB09673.1}; TaxID=880072 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfobacca.;" source="Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2).;"
CO dehydrogenase maturation factor
SR2-18-S2p5_coassembly_scaffold_236604_28
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24393..24704)
DNA (312bp) protein (104aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Sulfolobus islandicus (strain HVE10/4) RepID=F0NP72_SULIH
Uncharacterized protein {ECO:0000313|EMBL:ETX07515.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
cobyrinic acid ac-diamide synthase
SR2-18-S2p5_coassembly_scaffold_236604_29
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(24749..25243)
DNA (495bp) protein (165aa)
MerR family transcriptional regulator n=1 Tax=Williamsia sp. D3 RepID=V8D316_9ACTO
MerR family transcriptional regulator
Tax=RBG_16_Chloroflexi_50_9_curated
SR2-18-S2p5_coassembly_scaffold_236604_30
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(25252..26040)
DNA (789bp) protein (263aa)
CODH nickel-insertion accessory protein; K07321 CO dehydrogenase maturation factor id=14628347 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin8_Chloro organism_group=Chloroflexi
CODH nickel-insertion accessory protein
Tax=CSP1_4_Chloroflexi
Displaying items 1-30 of 63 in total

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