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SR2-18-B1_coassembly_111203

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR2-18-B1_coassembly_111203_1
RBG_16_Chloroflexi_57_8_curated, Chloroflexi, Bacteria

Not on your lists

1..234
-----------------
DNA (234bp)
protein (78aa)
polysulfide reductase NrfD; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] id=1250415 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
Tax=RBG_16_Chloroflexi_57_8_curated
SR2-18-B1_coassembly_111203_2
unknown

Not on your lists

249..386
-----------------
DNA (138bp)
protein (46aa)

This feature has no annotations

SR2-18-B1_coassembly_111203_3

Not on your lists

383..2644
-----------------
DNA (2262bp)
protein (754aa)
Uncharacterized protein {ECO:0000313|EMBL:KKO11049.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Molybdopterin oxidoreductase id=4757561 bin=GWA2_OP3_52_12 species=unknown genus=unknown taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
anaerobic dehydrogenase, typically selenocysteine-containing
SR2-18-B1_coassembly_111203_4
RLO_Gammaproteobacteria_52_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2659..3018)
-----------------
DNA (360bp)
protein (120aa)
D-proline reductase, PrdB subunit n=1 Tax=uncultured organism RepID=M1P1M6_9ZZZZ
Tax=RIFCSPLOWO2_12_FULL_Gammaproteobacteria_52_10_curated
SR2-18-B1_coassembly_111203_5
RLO_Gammaproteobacteria_52_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3037..3534)
-----------------
DNA (498bp)
protein (166aa)
Proline reductase n=1 Tax=uncultured organism RepID=M1Q217_9ZZZZ id=5224445 bin=16ft_combo_ws3_JS1 species=uncultured organism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Glycine/sarcosine/betaine reductase selenoprotein B (GRDB)
Tax=RIFCSPLOWO2_12_FULL_Gammaproteobacteria_52_10_curated
SR2-18-B1_coassembly_111203_6
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(3545..3916)
-----------------
DNA (372bp)
protein (124aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036BEB84
protein of unknown function DUF156
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
SR2-18-B1_coassembly_111203_7
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3913..6363)
-----------------
DNA (2451bp)
protein (817aa)
Heavy metal translocating P-type ATPase n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J685_ANAD2
Probable copper-transporting ATPase PacS {ECO:0000313|EMBL:GAO02192.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
heavy metal translocating P-type ATPase
SR2-18-B1_coassembly_111203_8
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(6369..6575)
-----------------
DNA (207bp)
protein (69aa)
Heavy metal transport/detoxification protein n=2 Tax=Rhodothermus marinus RepID=D0MF76_RHOM4
heavy metal transport/detoxification protein
Heavy metal transport/detoxification protein {ECO:0000313|EMBL:AEN74348.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
SR2-18-B1_coassembly_111203_9
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

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comp(6674..7207)
-----------------
DNA (534bp)
protein (178aa)
DinB family protein id=14630604 bin=bin9_gal15 species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin9_gal15 organism_group=GAL15
DinB family protein
Tax=CSP1_3_Armatimonadetes
SR2-18-B1_coassembly_111203_10
unknown

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comp(7179..7529)
-----------------
DNA (351bp)
protein (117aa)

This feature has no annotations

SR2-18-B1_coassembly_111203_11
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(7637..9004)
-----------------
DNA (1368bp)
protein (456aa)
acetoacetate metabolism regulatory protein AtoC n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B7A552
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:AFL89583.1}; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
SR2-18-B1_coassembly_111203_12
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(9001..10188)
-----------------
DNA (1188bp)
protein (396aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
histidine kinase n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B5E8FB
signal transduction histidine kinase
SR2-18-B1_coassembly_111203_13
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

10306..11610
-----------------
DNA (1305bp)
protein (435aa)
Outer membrane protein n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZK13_TERRK
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:AFL89581.1}; Flags: Precursor;; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
SR2-18-B1_coassembly_111203_14
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

11607..12791
-----------------
DNA (1185bp)
protein (395aa)
RND transporter n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B3DB01
RND family efflux transporter, MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AFL89580.1}; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
SR2-18-B1_coassembly_111203_15
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12795..15902
-----------------
DNA (3108bp)
protein (1036aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Methylovorus sp. (strain MP688) RepID=E4QLC3_METS6
CzcA family heavy metal efflux pump
Heavy metal efflux pump, cobalt-zinc-cadmium {ECO:0000313|EMBL:AEV25302.1}; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
SR2-18-B1_coassembly_111203_16

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16119..17054
-----------------
DNA (936bp)
protein (312aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000382E319
L1_beta_lactamase {ECO:0000313|EMBL:AIA11440.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
esterase
SR2-18-B1_coassembly_111203_17
unknown

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comp(17490..17693)
-----------------
DNA (204bp)
protein (68aa)

This feature has no annotations

SR2-18-B1_coassembly_111203_18
Amycolatopsis decaplanina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(17932..18408)
-----------------
DNA (477bp)
protein (159aa)
Uncharacterized protein n=1 Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2Z2N4_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:EME61517.1}; TaxID=1284240 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis decaplanina DSM 44594.;"
activator of HSP90 ATPase 1 family protein
SR2-18-B1_coassembly_111203_19
Amycolatopsis japonica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18412..18771)
-----------------
DNA (360bp)
protein (120aa)
ArsR family transcriptional regulator n=1 Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2ZKU7_9PSEU
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIG75119.1}; TaxID=208439 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis japonica.;"
SR2-18-B1_coassembly_111203_20
CSP1_5_NC10, NC10, Bacteria

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comp(19329..20462)
-----------------
DNA (1134bp)
protein (378aa)
peptidase M50 id=14428748 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
peptidase M50
Tax=CSP1_5_NC10
SR2-18-B1_coassembly_111203_21
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(20479..21492)
-----------------
DNA (1014bp)
protein (338aa)
Integral membrane protein, TerC family {ECO:0000313|EMBL:CDM65598.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Putative transport protein id=4661724 bin=GWA2_Methylomirabilis_73_35 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
membrane protein
SR2-18-B1_coassembly_111203_22
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21511..21759)
-----------------
DNA (249bp)
protein (83aa)
Uncharacterized protein n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I5Y1_DESAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA60461.1}; TaxID=477974 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis.;" source="Desulforudis audaxviator (strain MP104C).;"
SR2-18-B1_coassembly_111203_23
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(21734..21925)
-----------------
DNA (192bp)
protein (64aa)
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
SR2-18-B1_coassembly_111203_24
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(21967..22836)
-----------------
DNA (870bp)
protein (290aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
Protease HtpX homolog n=1 Tax=Desulfovibrio gigas DSM 1382 = ATCC 19364 RepID=T2GAX4_DESGI
putative peptidase M48 Ste24p
SR2-18-B1_coassembly_111203_25
unknown

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comp(23212..23859)
-----------------
DNA (648bp)
protein (216aa)

This feature has no annotations

SR2-18-B1_coassembly_111203_26
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23875..24417)
-----------------
DNA (543bp)
protein (181aa)
Outer membrane lipoprotein {ECO:0000313|EMBL:KIG19592.1}; TaxID=215803 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Enhygromyxa.;" source="Enhygromyxa salina.;"
lipocalin family protein; K03098 outer membrane lipoprotein Blc id=7201869 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
lipocalin family protein
SR2-18-B1_coassembly_111203_27
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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comp(24442..25158)
-----------------
DNA (717bp)
protein (239aa)
Putative uncharacterized protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHK5_CHLTF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEP12669.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
SR2-18-B1_coassembly_111203_28
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(25262..25804)
-----------------
DNA (543bp)
protein (181aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036F4E8A
transport-associated protein
Transport-associated {ECO:0000313|EMBL:ABJ82394.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SR2-18-B1_coassembly_111203_29
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(25956..26888)
-----------------
DNA (933bp)
protein (311aa)
Transcriptional regulator, LysR family n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02CJ6_SOLUE
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABJ81220.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SR2-18-B1_coassembly_111203_30
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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27667..27945
-----------------
DNA (279bp)
protein (93aa)
Uncharacterized protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8UX83_TERSS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV83046.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
Displaying items 1-30 of 31 in total

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