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SR2-18-B1_coassembly_245041

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SR2-18-B1_coassembly_245041_1
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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3..911
-----------------
DNA (909bp)
protein (303aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
Signal transduction histidine kinase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QM05_AZOSU
signal transduction histidine kinase
SR2-18-B1_coassembly_245041_2
RBG_13_Chloroflexi_48_17_curated, Chloroflexi, Bacteria

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874..1329
-----------------
DNA (456bp)
protein (152aa)
sensor with HAMP domain-containing protein
Tax=RBG_13_Chloroflexi_48_17_curated
SR2-18-B1_coassembly_245041_3
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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1359..2756
-----------------
DNA (1398bp)
protein (466aa)
Putative uncharacterized protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DFL1_9GAMM
nuclease PIN
Nuclease PIN {ECO:0000313|EMBL:AHE97220.1}; TaxID=713587 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
SR2-18-B1_coassembly_245041_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(3539..4993)
-----------------
DNA (1455bp)
protein (485aa)
FOG: WD40-like repeat-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XM67_9BACT
WD40 repeat-like protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
SR2-18-B1_coassembly_245041_5
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(5096..5251)
-----------------
DNA (156bp)
protein (52aa)
50S ribosomal protein L33 n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZGI1_TERRK
50S ribosomal protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
SR2-18-B1_coassembly_245041_6
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5261..5497)
-----------------
DNA (237bp)
protein (79aa)
50S ribosomal protein L28 n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4SZT6_META2
rpmB; 50S ribosomal protein L28
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1091494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM; B-2133 / 20Z).;"
SR2-18-B1_coassembly_245041_7

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5576..6640
-----------------
DNA (1065bp)
protein (355aa)
Uncharacterized protein n=1 Tax=Joostella marina DSM 19592 RepID=I3C6N4_9FLAO
WD40 domain-containing protein {ECO:0000313|EMBL:AHF24577.1}; TaxID=1393449 species="Bacteria; environmental samples.;" source="uncultured bacterium Contig1529.;"
SR2-18-B1_coassembly_245041_8
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6634..7806)
-----------------
DNA (1173bp)
protein (391aa)
hypothetical protein n=1 Tax=Lewinella persica RepID=UPI00035E5FDF
acyltransferase
Acyltransferase {ECO:0000313|EMBL:BAM92329.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SR2-18-B1_coassembly_245041_9
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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8036..9211
-----------------
DNA (1176bp)
protein (392aa)
hydrogenase (NiFe) small subunit HydA (EC:1.12.99.6)
Hydrogenase (NiFe) small subunit HydA n=1 Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=B3QP47_CHLP8
Uptake hydrogenase small subunit {ECO:0000313|EMBL:KDA54330.1}; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
SR2-18-B1_coassembly_245041_10
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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9226..10947
-----------------
DNA (1722bp)
protein (574aa)
Hydrogenase {ECO:0000313|EMBL:KDA54329.1}; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Nickel-dependent hydrogenase large subunit id=4121327 bin=GWF2_Bacteroidetes_41_31 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
nickel-dependent hydrogenase large subunit
SR2-18-B1_coassembly_245041_11
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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10957..11682
-----------------
DNA (726bp)
protein (242aa)
Hup-type Ni Fe-hydrogenase cytochrome b subunit n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI0003795B5A
Uncharacterized protein {ECO:0000313|EMBL:KDA54328.1}; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Hup-type Ni Fe-hydrogenase cytochrome b subunit
SR2-18-B1_coassembly_245041_12
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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11663..12190
-----------------
DNA (528bp)
protein (176aa)
Hydrogenase maturation protease n=1 Tax=Corynebacterium glucuronolyticum ATCC 51867 RepID=C0VXU4_9CORY
Uncharacterized protein {ECO:0000313|EMBL:AHH97557.1}; TaxID=1449976 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
hypothetical protein
SR2-18-B1_coassembly_245041_13
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

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12187..13482
-----------------
DNA (1296bp)
protein (432aa)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI000367D7F1
glycoside hydrolase family protein
Tax=GWF2_Verrucomicrobia_62_7_curated
SR2-18-B1_coassembly_245041_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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13500..13733
-----------------
DNA (234bp)
protein (78aa)
CopG-like DNA-binding id=3112956 bin=GWC2_Methylomirabilis_70_16 species=Chlorobium ferrooxidans genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
SR2-18-B1_coassembly_245041_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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13718..14053
-----------------
DNA (336bp)
protein (112aa)
PemK-like protein id=3112961 bin=GWC2_Methylomirabilis_70_16 species=Chlorobium ferrooxidans genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
MazF family transcriptional regulator
Tax=GWC2_Rokubacteria_70_16_curated
SR2-18-B1_coassembly_245041_16
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

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14167..14379
-----------------
DNA (213bp)
protein (71aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000381BA54
hypothetical protein
Tax=RBG_13_Aminicenantes_62_12_curated
SR2-18-B1_coassembly_245041_17
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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14395..15249
-----------------
DNA (855bp)
protein (285aa)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (EC:4.1.1.68)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase {ECO:0000313|EMBL:ABJ85927.1}; EC=4.1.1.68 {ECO:0000313|EMBL:ABJ85927.1};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000373D28F
SR2-18-B1_coassembly_245041_18
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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15258..16424
-----------------
DNA (1167bp)
protein (389aa)
aminotransferase (EC:2.6.1.-)
Aminotransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VT2_SOLUE
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
SR2-18-B1_coassembly_245041_19
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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16467..17150
-----------------
DNA (684bp)
protein (228aa)
adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Adenylate kinase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01SJ5_SOLUE
SR2-18-B1_coassembly_245041_20
unknown

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17223..17936
-----------------
DNA (714bp)
protein (238aa)

This feature has no annotations

SR2-18-B1_coassembly_245041_21
unknown

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17941..19404
-----------------
DNA (1464bp)
protein (488aa)

This feature has no annotations

SR2-18-B1_coassembly_245041_22
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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19565..20299
-----------------
DNA (735bp)
protein (245aa)
NDP-sugar oxidoreductase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FFV6_SORC5
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EYF01926.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
NDP-sugar oxidoreductase
Displaying 22 items

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