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AMDSBAU_4

Alias: SULFO_OTHER_4

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Displaying items 1-30 of 57 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBAU_4_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(236..991)
DNA (756bp) protein (252aa)
LuxR family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:AEW04379.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Transcriptional regulator, LuxR family n=2 Tax=Sulfobacillus acidophilus RepID=G8TS53_SULAD (db=UNIREF evalue=4.9e-53 bit_score=213.8 identity=52.8 coverage=83.73015873015873)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=52)
AMDSBAU_4_2
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1637..1897)
DNA (261bp) protein (87aa)
Uncharacterized protein {ECO:0000313|EMBL:CDH44846.1}; TaxID=1400861 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contend
1637..1897 - ( gc_cont=0.548)
AMDSBAU_4_3
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1920..3245)
DNA (1326bp) protein (442aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX53242.1}; TaxID=429009 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Ammonifex.;" source="Amm
Putative uncharacterized protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RDH1_AMMDK (db=UNIREF evalue=3.7e-96 bit_score=357.8 identity=47.7 coverage=96.83257918552036)
coiled-coil (db=Coil db_id=coil from=372 to=393 evalue=NA)
AMDSBAU_4_4
unknown

Not on your lists

comp(3668..3958)
DNA (291bp) protein (97aa)
seg (db=Seg db_id=seg from=20 to=46)
AMDSBAU_4_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3945..4739)
DNA (795bp) protein (265aa)
chromosome segregation ATPase
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:AEJ41977.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" so
Cobyrinic acid ac-diamide synthase n=2 Tax=Sulfobacillus acidophilus RepID=F8I300_SULAT (db=UNIREF evalue=3.8e-56 bit_score=224.2 identity=46.9 coverage=94.71698113207547)
seg (db=Seg db_id=seg from=158 to=169)
AMDSBAU_4_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5349..5660
DNA (312bp) protein (104aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ41413.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I8W6_SULAT
seg (db=Seg db_id=seg from=30 to=39)
AMDSBAU_4_7
unknown

Not on your lists

5657..6028
DNA (372bp) protein (124aa)
5657..6028 + ( gc_cont=0.511)
AMDSBAU_4_8
Corynebacterium minutissimum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6915..7586
DNA (672bp) protein (224aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO30144.1}; TaxID=38301 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium minutissimum.;"
seg (db=Seg db_id=seg from=130 to=147)
seg (db=Seg db_id=seg from=16 to=59)
AMDSBAU_4_9
unknown

Not on your lists

comp(7761..8501)
DNA (741bp) protein (247aa)
7761..8501 - ( gc_cont=0.536)
AMDSBAU_4_10
unknown

Not on your lists

comp(8523..9839)
DNA (1317bp) protein (439aa)
seg (db=Seg db_id=seg from=45 to=56)
YVTN repeat-like/Quinoprotein amine dehydrogenase (db=superfamily db_id=SSF50969 from=227 to=419 evalue=4.1e-09 interpro_id=IPR011044 interpro_description=Quinoprotein amine dehydrogenase, beta chain-like)
AMDSBAU_4_11
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(9971..10309)
DNA (339bp) protein (113aa)
phoP; alkaline phosphatase synthesis transcriptional regulatory protein PhoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP {ECO:0000313|EMBL:ACM05366.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobiu
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0A7_THERP (db=UNIREF evalue=3.0e-10 bit_score=70.5 identity=38.2 coverage=92.92035398230088)
(db=HMMPfam db_id=PF00486 from=36 to=108 evalue=1.8e-13 interpro_id=IPR001867 interpro_description=Signal transduction response regulator, C-terminal GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBAU_4_12
unknown

Not on your lists

comp(10264..10440)
DNA (177bp) protein (59aa)
10264..10440 - ( gc_cont=0.480)
AMDSBAU_4_13
unknown

Not on your lists

comp(10440..10706)
DNA (267bp) protein (89aa)
seg (db=Seg db_id=seg from=8 to=31)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=53)
transmembrane_regions (db=TMHMM db_id=tmhmm from=60 to=82)
AMDSBAU_4_14
unknown

Not on your lists

comp(11092..11376)
DNA (285bp) protein (95aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=43 to=65)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=28)
seg (db=Seg db_id=seg from=9 to=22)
AMDSBAU_4_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11596..12159)
DNA (564bp) protein (188aa)
LuxR family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:AEJ41174.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
Transcriptional regulator, LuxR family n=2 Tax=Sulfobacillus acidophilus RepID=G8TS53_SULAD (db=UNIREF evalue=7.7e-35 bit_score=152.9 identity=45.5 coverage=97.3404255319149)
seg (db=Seg db_id=seg from=5 to=23)
AMDSBAU_4_16
R_Gammaproteobacteria_45_12, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12604..12816
DNA (213bp) protein (71aa)
anti-toxin-like protein Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_45_12_curated
CopG-like domain-containing protein DNA-binding n=1 Tax=Thiocapsa marina 5811 RepID=F9U6D7_9GAMM (db=UNIREF evalue=9.1e-13 bit_score=78.2 identity=55.7 coverage=97.1830985915493)
DNA-binding domain-containing protein
(db=HMMPfam db_id=PF01402 from=4 to=38 evalue=1.1e-07 interpro_id=IPR002145 interpro_description=CopG-like DNA-binding GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBAU_4_17
Necator americanus, Necator, Rhabditida, Chromadorea, Nematoda, Metazoa

Not on your lists

12794..13066
DNA (273bp) protein (91aa)
Addiction module toxin, RelE/StbE family {ECO:0000313|EMBL:ETN72347.1}; TaxID=51031 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Ancylostomatoidea; Ancylosto
addiction module toxin, RelE/StbE family
Addiction module toxin, RelE/StbE family n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DZD4_THIND
seg (db=Seg db_id=seg from=10 to=21)
AMDSBAU_4_18
unknown

Not on your lists

comp(13984..15219)
DNA (1236bp) protein (412aa)
seg (db=Seg db_id=seg from=222 to=234)
(db=HMMPfam db_id=PF02012 from=77 to=86 evalue=0.55 interpro_id=IPR002860 interpro_description=BNR repeat)
(db=HMMPfam db_id=PF02012 from=395 to=404 evalue=1.2 interpro_id=IPR002860 interpro_description=BNR repeat)
(db=HMMPfam db_id=PF02012 from=307 to=316 evalue=3.1 interpro_id=IPR002860 interpro_description=BNR repeat)
AMDSBAU_4_19
unknown

Not on your lists

comp(15308..16027)
DNA (720bp) protein (240aa)
seg (db=Seg db_id=seg from=27 to=39)
AMDSBAU_4_20
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16161..16502)
DNA (342bp) protein (114aa)
two-component system response regulator
Two-component system response regulator {ECO:0000313|EMBL:CAJ65206.1}; TaxID=326424 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
Two component transcriptional regulator, winged helix family n=8 Tax=Frankia RepID=Q2J4Y7_FRASC
C-terminal effector domain of the bipartite response regulators (db=superfamily db_id=SSF46894 from=14 to=111 evalue=2.9e-17 interpro_id=IPR016032 interpro_description=Signal transduction response regulator, C-terminal effector GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Cellular Component: intracellular (GO:0005622), Biological Process: r
AMDSBAU_4_21
unknown

Not on your lists

comp(16553..16726)
DNA (174bp) protein (58aa)
16553..16726 - ( gc_cont=0.575)
AMDSBAU_4_22
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17159..17512)
DNA (354bp) protein (118aa)
Tax=BJP_IG2103_Clostridiales_50_15
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=1 to=110 evalue=1.1e-13 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
(db=HMMPfam db_id=PF00486 from=28 to=103 evalue=1.8e-11 interpro_id=IPR001867 interpro_description=Signal transduction response regulator, C-terminal GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
C-terminal effector domain of the bipartite response regulators (db=superfamily db_id=SSF46894 from=8 to=106 evalue=3.2e-16 interpro_id=IPR016032 interpro_description=Signal transduction response regulator, C-terminal effector GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Cellular Component: intracellular (GO:0005622), Biological Process: re
AMDSBAU_4_23
unknown

Not on your lists

comp(17826..18110)
DNA (285bp) protein (95aa)
seg (db=Seg db_id=seg from=42 to=51)
AMDSBAU_4_24
Thiomonas intermedia, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18201..20387)
DNA (2187bp) protein (729aa)
DNA topoisomerase (EC:5.99.1.2)
DNA topoisomerase (EC:5.99.1.2)
DNA topoisomerase {ECO:0000313|EMBL:ADG31552.1}; EC=5.99.1.2 {ECO:0000313|EMBL:ADG31552.1};; TaxID=75379 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Th
DNA topoisomerase n=1 Tax=Thiomonas intermedia (strain K12) RepID=D5X3W5_THIK1
AMDSBAU_4_25
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20384..20737)
DNA (354bp) protein (118aa)
Mobilization protein {ECO:0000313|EMBL:EHK62900.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenito
Mobilization protein n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0FFP3_9BURK (db=UNIREF evalue=5.3e-34 bit_score=149.4 identity=67.0 coverage=94.0677966101695)
hypothetical protein
seg (db=Seg db_id=seg from=96 to=110)
AMDSBAU_4_26
unknown

Not on your lists

21334..21750
DNA (417bp) protein (139aa)
coiled-coil (db=Coil db_id=coil from=105 to=126 evalue=NA)
AMDSBAU_4_27
unknown

Not on your lists

22433..22693
DNA (261bp) protein (87aa)
coiled-coil (db=Coil db_id=coil from=31 to=52 evalue=NA)
seg (db=Seg db_id=seg from=37 to=52)
AMDSBAU_4_28
unknown

Not on your lists

22876..23418
DNA (543bp) protein (181aa)
seg (db=Seg db_id=seg from=5 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=21 evalue=5.0)
AMDSBAU_4_29
unknown

Not on your lists

comp(23441..24106)
DNA (666bp) protein (222aa)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=134 to=216 evalue=2.3e-07 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, superfamily)
AMDSBAU_4_30
unknown

Not on your lists

comp(24359..24556)
DNA (198bp) protein (66aa)
24359..24556 - ( gc_cont=0.470)
Displaying items 1-30 of 57 in total

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