ggKbase home page

AMDSBAU_33

Alias: SULFO_OTHER_33

Search features with annotation key words

Displaying 24 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBAU_33_1
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(184..1392)
DNA (1209bp) protein (403aa)
integrase family protein
Integrase family protein {ECO:0000313|EMBL:AEJ38637.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulf
Integrase family protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6F7_SULAT (db=UNIREF evalue=5.3e-166 bit_score=589.7 identity=67.6 coverage=99.0074441687345)
no description (db=Gene3D db_id=G3DSA:1.10.443.10 from=183 to=375 evalue=3.3e-36 interpro_id=IPR013762 interpro_description=Integrase-like, catalytic core GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA recombination (GO:0006310), Biological Process: DNA integration (GO:0015074))
AMDSBAU_33_2
unknown

Not on your lists

1494..1742
DNA (249bp) protein (83aa)
1494..1742 + ( gc_cont=0.486)
AMDSBAU_33_3
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1899..4214)
DNA (2316bp) protein (772aa)
Uncharacterized protein {ECO:0000313|EMBL:KEO82442.1}; TaxID=1157490 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagellatus.;"
Putative uncharacterized protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2U2_9BACL
Putative uncharacterized protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2U2_9BACL (db=UNIREF evalue=2.4e-228 bit_score=797.7 identity=51.2 coverage=98.57512953367875)
hypothetical protein
AMDSBAU_33_4
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4211..6184)
DNA (1974bp) protein (658aa)
DNA methyltransferase {ECO:0000313|EMBL:KEO82443.1}; TaxID=1157490 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Tumebacillus.;" source="Tumebacillus flagellatus.;"
Site-specific DNA-methyltransferase n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2U3_9BACL
Site-specific DNA-methyltransferase n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J2U3_9BACL (db=UNIREF evalue=7.4e-218 bit_score=762.7 identity=57.0 coverage=97.72036474164135)
DNA methylase N-4/N-6 domain protein rbh
AMDSBAU_33_5
unknown

Not on your lists

6360..7082
DNA (723bp) protein (241aa)
seg (db=Seg db_id=seg from=55 to=64)
AMDSBAU_33_6
unknown

Not on your lists

7072..7596
DNA (525bp) protein (175aa)
coiled-coil (db=Coil db_id=coil from=126 to=147 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=150 to=172)
AMDSBAU_33_7
unknown

Not on your lists

7739..7849
DNA (111bp) protein (37aa)
7739..7849 + ( gc_cont=0.586)
AMDSBAU_33_8
unknown

Not on your lists

comp(7857..8717)
DNA (861bp) protein (287aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=63 to=85)
transmembrane_regions (db=TMHMM db_id=tmhmm from=100 to=122)
AMDSBAU_33_9
unknown

Not on your lists

9462..9659
DNA (198bp) protein (66aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
AMDSBAU_33_10
unknown

Not on your lists

comp(9783..10946)
DNA (1164bp) protein (388aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Concanavalin A-like lectins/glucanases (db=superfamily db_id=SSF49899 from=70 to=215 evalue=6.7e-06 interpro_id=IPR008985 interpro_description=Concanavalin A-like lectin/glucanase)
AMDSBAU_33_11
unknown

Not on your lists

comp(11052..11246)
DNA (195bp) protein (65aa)
seg (db=Seg db_id=seg from=33 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
AMDSBAU_33_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11227..12876)
DNA (1650bp) protein (550aa)
TraG/TraD family protein
TraG/TraD family protein {ECO:0000313|EMBL:AEJ38624.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulf
TraG/TraD family protein n=1 Tax=Sulfobacillus acidophilus TPY RepID=F8I6E4_SULAT (db=UNIREF evalue=6.3e-170 bit_score=603.2 identity=67.7 coverage=78.9090909090909)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=53 to=457 evalue=3.5e-33)
AMDSBAU_33_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12904..15450)
DNA (2547bp) protein (849aa)
conjugative relaxase domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:AEW03952.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Conjugative relaxase domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TY45_SULAD (db=UNIREF evalue=1.1e-170 bit_score=606.3 identity=59.5 coverage=58.89281507656066)
coiled-coil (db=Coil db_id=coil from=805 to=826 evalue=NA)
AMDSBAU_33_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15554..15853)
DNA (300bp) protein (100aa)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6E0_SULAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ38620.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBAU_33_15
unknown

Not on your lists

comp(16064..16384)
DNA (321bp) protein (107aa)
16064..16384 - ( gc_cont=0.536)
AMDSBAU_33_16
unknown

Not on your lists

comp(16384..16839)
DNA (456bp) protein (152aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=40 to=62)
transmembrane_regions (db=TMHMM db_id=tmhmm from=67 to=86)
transmembrane_regions (db=TMHMM db_id=tmhmm from=123 to=145)
seg (db=Seg db_id=seg from=124 to=139)
AMDSBAU_33_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17061..18530)
DNA (1470bp) protein (490aa)
ATPase n=2 Tax=Sulfobacillus acidophilus RepID=F8I6D6_SULAT (db=UNIREF evalue=3.4e-143 bit_score=514.2 identity=54.3 coverage=98.9795918367347)
AAA ATPase
ATPase {ECO:0000313|EMBL:AEJ38616.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfobacillus acidophi
seg (db=Seg db_id=seg from=187 to=196)
AMDSBAU_33_18
unknown

Not on your lists

comp(18544..18990)
DNA (447bp) protein (149aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=51)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=86)
AMDSBAU_33_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18968..19168)
DNA (201bp) protein (67aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ38614.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6D4_SULAT
AMDSBAU_33_20
unknown

Not on your lists

comp(19150..19446)
DNA (297bp) protein (99aa)
19150..19446 - ( gc_cont=0.515)
AMDSBAU_33_21
unknown

Not on your lists

comp(19403..19735)
DNA (333bp) protein (111aa)
coiled-coil (db=Coil db_id=coil from=54 to=75 evalue=NA)
seg (db=Seg db_id=seg from=85 to=96)
AMDSBAU_33_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20278..21558)
DNA (1281bp) protein (427aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEJ38610.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I6D0_SULAT
AMDSBAU_33_23
unknown

Not on your lists

comp(21632..21826)
DNA (195bp) protein (65aa)
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=10 to=58 evalue=3.0e-07 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
(db=HMMPfam db_id=PF05930 from=9 to=38 evalue=6.6e-05 interpro_id=IPR010260 interpro_description=Bacteriophage P4, Orf88)
AMDSBAU_33_24
unknown

Not on your lists

21943..22068
DNA (126bp) protein (42aa)
(db=HMMPfam db_id=PF01381 from=15 to=42 evalue=2.1e-06 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
Displaying 24 items

View Taxonomy