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ar4r2_scaffold_2129

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ar4r2_scaffold_2129_1
Candidatus Ruthia magnifica, Candidatus Ruthia, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..373
DNA (372bp) protein (124aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu 2 n=1 Tax=Ruthia magnifica subsp. Calyptogena magnifica RepID=EFTU2_RUTMC
Elongation factor Tu 2 {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu 2 {ECO:0000255|HAMAP-Rule:MF_00118};; TaxID=413404 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbio
ar4r2_scaffold_2129_2
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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544..855
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1 Tax=Thiomicrospira halophila RepID=UPI00036CC18C
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogen
30S ribosomal protein S10
ar4r2_scaffold_2129_3
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


915..1553
DNA (639bp) protein (213aa)
50S ribosomal protein L3 n=6 Tax=Aeromonas veronii RepID=F4DGF6_AERVB
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1354302 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromona
50S ribosomal protein L3
ar4r2_scaffold_2129_4
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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1566..2186
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=1 Tax=Thiomicrospira arctica RepID=UPI000382C65B
50S ribosomal protein L4
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thio
ar4r2_scaffold_2129_5
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2183..3181
DNA (999bp) protein (333aa)
50S ribosomal protein L2 n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8Y1_9GAMM
50S ribosomal protein L2
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thio
ar4r2_scaffold_2129_6
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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3265..3540
DNA (276bp) protein (92aa)
30S ribosomal protein S19 n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6D971_THICA
30S ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thi
ar4r2_scaffold_2129_7
Thioalkalimicrobium cyclicum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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3551..3886
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=1 Tax=Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) RepID=F6D972_THICA
50S ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=717773 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thi
ar4r2_scaffold_2129_8
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3897..4595
DNA (699bp) protein (233aa)
30S ribosomal protein S3 n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8X8_9GAMM rbh
30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thioalkalimicrobium.;" source="Thio
ar4r2_scaffold_2129_9
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4611..5024
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Microbulbifer variabilis RepID=UPI000366B047
50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thi
ar4r2_scaffold_2129_10
Idiomarina loihiensis, Idiomarina, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5026..5214
DNA (189bp) protein (63aa)
50S ribosomal protein L29 n=2 Tax=Idiomarina loihiensis RepID=RL29_IDILO
50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000255|HAMAP-Rule:MF_00374}; TaxID=283942 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina.;" source="Idiomarina loih
ar4r2_scaffold_2129_11
Oleispira antarctica, Oleispira, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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5211..5471
DNA (261bp) protein (87aa)
30S ribosomal protein S17 n=1 Tax=Oleispira antarctica RB-8 RepID=R4YQP7_OLEAN
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=698738 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oleispira.;" source=
rpsQ; 30S ribosomal protein S17
ar4r2_scaffold_2129_12
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5586..5954
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8X4_9GAMM
50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thi
ar4r2_scaffold_2129_13
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5968..6279
DNA (312bp) protein (104aa)
50S ribosomal protein L24 n=1 Tax=Thiomicrospira halophila RepID=UPI000376B80F
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogen
rplX; 50S ribosomal protein L24
ar4r2_scaffold_2129_14
Methylophaga frappieri, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6295..6834
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5SWW4_9GAMM
50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=754477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophag
ar4r2_scaffold_2129_15
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6843..7148
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=RS14_THICR
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14 Tax=CG_Thiomicrospira_01
30S ribosomal protein S14
ar4r2_scaffold_2129_16
Shewanella amazonensis, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7173..7568
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) RepID=RS8_SHEAM
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000255|HAMAP-Rule:MF_01302}; TaxID=326297 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella amazo
ar4r2_scaffold_2129_17
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7580..8113
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) RepID=RL6_BURTA
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 Tax=CG_Thiomicrospira_01
rplF; ribosomal protein L6
ar4r2_scaffold_2129_18
Alteromonas sp. SN2, Alteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8124..8477
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Thiothrix disciformis RepID=UPI00037870CB
50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=715451 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas.;" source="Alteromonas
ar4r2_scaffold_2129_19
Thioalkalimicrobium aerophilum, Thioalkalimicrobium, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8489..9007
DNA (519bp) protein (173aa)
30S ribosomal protein S5 n=1 Tax=Thioalkalimicrobium aerophilum AL3 RepID=G4D8W7_9GAMM
30S ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=717772 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thio
ar4r2_scaffold_2129_20
Succinatimonas sp. CAG:777, Succinatimonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9010..9192
DNA (183bp) protein (61aa)
50S ribosomal protein L30 n=1 Tax=Succinatimonas sp. CAG:777 RepID=R5EYK6_9GAMM
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1262974 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Succinivibrionaceae; Su
rpmD; 50S ribosomal protein L30
ar4r2_scaffold_2129_21
Piscirickettsia salmonis, Piscirickettsia, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9192..9629
DNA (438bp) protein (146aa)
50S ribosomal protein L15 n=1 Tax=Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7) RepID=I1YKV3_METFJ
50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1238 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Pisci
ar4r2_scaffold_2129_22
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9632..10942
DNA (1311bp) protein (437aa)
Protein translocase subunit SecY n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=Q31IW2_THICR rbh
secY; preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiace
ar4r2_scaffold_2129_23
Thiomicrospira crunogena, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11022..11378
DNA (357bp) protein (119aa)
30S ribosomal protein S13 n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=RS13_THICR
rpsM; 30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000255|HAMAP-Rule:MF_01315}; TaxID=317025 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira.;" source="Thiomicr
ar4r2_scaffold_2129_24
Marinobacter similis, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11398..11793
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=9 Tax=Marinobacter RepID=RS11_MARAV
rpsK; 30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1420916 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobact
ar4r2_scaffold_2129_25
Hydrogenovibrio marinus, Hydrogenovibrio, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11809..12429
DNA (621bp) protein (207aa)
30S ribosomal protein S4 n=1 Tax=Thiomicrospira halophila RepID=UPI000370AF27 rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=28885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Hydrogenovibrio.;" source="Hydrogeno
30S ribosomal protein S4
ar4r2_scaffold_2129_26
CG_Thiomicrospira_01, Thiomicrospira, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12465..13448
DNA (984bp) protein (328aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=CG_Thiomicrospira_01
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Thiomicrospira crunogena (strain XCL-2) RepID=RPOA_THICR rbh
ar4r2_scaffold_2129_27
Endozoicomonas numazuensis, Endozoicomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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13465..13839
DNA (375bp) protein (125aa)
50S ribosomal protein L17 n=1 Tax=Dasania marina RepID=UPI000379F2F4
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1137799 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Hahellaceae; Endozo
50S ribosomal protein L17
ar4r2_scaffold_2129_28
Neisseria flavescens, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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13905..14462
DNA (558bp) protein (186aa)
Hydrolase, TatD family n=1 Tax=Neisseria flavescens NRL30031/H210 RepID=C0ELK3_NEIFL
Hydrolase, TatD family {ECO:0000313|EMBL:EEG34083.1}; TaxID=546264 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Neisseria flavescens NRL3003
TatD family Mg-dependent DNase
Displaying 28 items

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