ggKbase home page
Advanced Search
Search Help

Alum_Rock_2019_MS4_unknown_57_51

Alum_Rock_2019_MS4_Deltaproteobacteria_57_51
In projects: Alum_Rock_2019_MS4  |  alumrock-genomes

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: Alum_Rock_2019_MS4_UNK

Properties

Avg. coverage: 50.89 Longest contig: 167.04 Kbp Bin length: 2.96 Mbp GC content: 57.17 %
Contigs count: 127 Features count: 2857 rRNAs count: 0 tRNAs count: 40

Genome completeness

near complete RP 42 / 55 MC: 2 BSCG 46 / 51 MC: 3 ASCG 10 / 38 MC: 1
Displaying items 1-50 of 127 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
AR_MS4_05142019_scaffold_28052
Class: Deltaproteobacteria (85.71%)
7 7646 bp 55.39 55.75 78.00
AR_MS4_05142019_scaffold_55805
Species: RBG_16_Deltaproteobacteria_58_17_curated (50%)
4 2150 bp 55.40 46.47 96.42
AR_MS4_05142019_scaffold_12995
Class: Deltaproteobacteria (50%)
8 7083 bp 55.43 52.31 86.57
AR_MS4_05142019_scaffold_78066
Species: RBG_19FT_COMBO_Syntrophobacterales_59_10_curated (66.67%)
3 1681 bp 55.44 68.62 99.58
AR_MS4_05142019_scaffold_40005
Class: Deltaproteobacteria (50%)
4 2743 bp 55.45 49.16 79.40
AR_MS4_05142019_scaffold_561
Class: Deltaproteobacteria (98.41%)
63 48110 bp 55.46 49.69 90.09
AR_MS4_05142019_scaffold_88864
Species: GWC2_Syntrophus_56_31_curated (50%)
2 1530 bp 55.49 55.20 78.24
AR_MS4_05142019_scaffold_1978
Class: Deltaproteobacteria (80%)
20 22742 bp 55.49 48.91 90.10
AR_MS4_05142019_scaffold_1736
Class: Deltaproteobacteria (78.95%)
57 63645 bp 55.50 50.40 88.28
AR_MS4_05142019_scaffold_12973
Class: Deltaproteobacteria (77.78%)
9 9611 bp 55.54 53.27 75.41
AR_MS4_05142019_scaffold_4014
Class: Deltaproteobacteria (75%)
28 31234 bp 55.57 55.49 80.71
AR_MS4_05142019_scaffold_1384
Class: Deltaproteobacteria (72.41%)
29 28644 bp 55.69 46.50 86.88
AR_MS4_05142019_scaffold_5007
Class: Deltaproteobacteria (90%)
20 14617 bp 55.72 49.73 84.50
AR_MS4_05142019_scaffold_152730
Class: Deltaproteobacteria (66.67%)
3 1023 bp 55.72 42.38 56.60
AR_MS4_05142019_scaffold_1166
Class: Deltaproteobacteria (73.33%)
30 31931 bp 55.75 52.16 91.82
AR_MS4_05142019_scaffold_1079
Class: Deltaproteobacteria (77.14%)
35 33518 bp 55.81 56.67 83.83
AR_MS4_05142019_scaffold_2717
Class: Deltaproteobacteria (76%)
25 26262 bp 55.85 55.88 88.07
AR_MS4_05142019_scaffold_297
Class: Deltaproteobacteria (80.65%)
62 68812 bp 55.87 48.61 89.66
AR_MS4_05142019_scaffold_3355
Class: Deltaproteobacteria (72.41%)
29 40788 bp 55.88 49.02 90.85
AR_MS4_05142019_scaffold_101719
Species: RBG_16_Deltaproteobacteria_58_17_curated (100%)
1 1385 bp 55.96 67.26 85.34
AR_MS4_05142019_scaffold_19791
Class: Deltaproteobacteria (60%)
5 5081 bp 55.97 51.13 75.63
AR_MS4_05142019_scaffold_10291
Class: Deltaproteobacteria (50%)
16 14138 bp 55.98 47.79 90.97
AR_MS4_05142019_scaffold_147929
Species: RBG_16_Desulfobacca_60_12_curated (100%)
2 1048 bp 56.20 46.66 72.71
AR_MS4_05142019_scaffold_396
Class: Deltaproteobacteria (67.86%)
56 61484 bp 56.26 56.48 88.35
AR_MS4_05142019_scaffold_1172
Class: Deltaproteobacteria (78.79%)
33 39465 bp 56.27 57.02 90.89
AR_MS4_05142019_scaffold_6418
Class: Deltaproteobacteria (75%)
12 12530 bp 56.32 44.64 89.14
AR_MS4_05142019_scaffold_1657
Class: Deltaproteobacteria (81.58%)
38 57621 bp 56.32 61.05 90.83
AR_MS4_05142019_scaffold_285685
Species: RBG_16_Deltaproteobacteria_58_17_curated (100%)
2 1042 bp 56.33 52.98 88.10
AR_MS4_05142019_scaffold_3850
Class: Deltaproteobacteria (50%)
26 24710 bp 56.34 51.67 89.02
AR_MS4_05142019_scaffold_7077
Class: Deltaproteobacteria (85.71%)
14 10296 bp 56.34 50.60 96.85
AR_MS4_05142019_scaffold_162175
Species: delta proteobacterium MLMS-1 (50%)
2 1531 bp 56.37 53.10 86.61
AR_MS4_05142019_scaffold_59508
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
3 2560 bp 56.37 61.17 90.59
AR_MS4_05142019_scaffold_198803
Species: RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated (50%)
2 1340 bp 56.42 43.66 72.31
AR_MS4_05142019_scaffold_2550
Class: Deltaproteobacteria (78.26%)
23 22657 bp 56.44 50.45 90.15
AR_MS4_05142019_scaffold_90067
Species: RBG_16_Deltaproteobacteria_58_17_curated (50%)
2 1515 bp 56.44 63.86 92.48
AR_MS4_05142019_scaffold_47119
Class: Deltaproteobacteria (50%)
4 2431 bp 56.48 62.94 80.95
AR_MS4_05142019_scaffold_951
Class: Deltaproteobacteria (85.19%)
135 139134 bp 56.50 46.38 90.60
AR_MS4_05142019_scaffold_1551
Class: Deltaproteobacteria (75.68%)
37 35907 bp 56.50 51.45 87.37
AR_MS4_05142019_scaffold_10070
Class: Deltaproteobacteria (50%)
12 7489 bp 56.51 46.91 94.71
AR_MS4_05142019_scaffold_6875
Class: Deltaproteobacteria (77.78%)
18 16973 bp 56.56 53.24 91.65
AR_MS4_05142019_scaffold_5765
Class: Deltaproteobacteria (76.92%)
13 11042 bp 56.67 56.51 87.67
AR_MS4_05142019_scaffold_25538
Class: Deltaproteobacteria (63.64%)
11 10594 bp 56.72 56.17 69.01
AR_MS4_05142019_scaffold_38391
Class: Deltaproteobacteria (71.43%)
7 5071 bp 56.73 40.85 91.88
AR_MS4_05142019_scaffold_455
Class: Deltaproteobacteria (90.7%)
43 53641 bp 56.73 48.96 83.96
AR_MS4_05142019_scaffold_1229
Class: Deltaproteobacteria (82.76%)
58 61302 bp 56.80 48.49 89.91
AR_MS4_05142019_scaffold_2692
Species: RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated (50%)
14 18457 bp 56.82 43.44 92.19
AR_MS4_05142019_scaffold_16363
Class: Deltaproteobacteria (62.5%)
8 6117 bp 56.83 55.62 92.79
AR_MS4_05142019_scaffold_219231
Species: RBG_16_Deltaproteobacteria_58_17_curated (100%)
1 1198 bp 56.84 48.58 59.60
AR_MS4_05142019_scaffold_1619
Class: Deltaproteobacteria (62.3%)
61 56525 bp 56.88 49.75 87.82
AR_MS4_05142019_scaffold_4090
Class: Deltaproteobacteria (93.33%)
15 13963 bp 56.88 46.40 90.37
Displaying items 1-50 of 127 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.