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ALUMROCK_MS4_Thiotrichales-related_46_269_curated

ALUMROCK_MS4_Gammaproteobacteria_46_1
In projects: ALUMROCK_MS4  |  alumrock-genomes

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: ALUMROCK_MS4_Thiotrichales-related_46_269 Manually curated genome
Original version: ALUMROCK_MS4_Thiotrichales-related_46_269

Properties

Avg. coverage: 1.00 Longest contig: 27.97 Kbp Bin length: 1.89 Mbp GC content: 46.31 %
Contigs count: 381 Features count: 2126 rRNAs count: 0 tRNAs count: 26

Genome completeness

near complete RP 47 / 55 MC: 3 BSCG 49 / 51 MC: 5 ASCG 11 / 38 MC: 2
Displaying items 101-150 of 381 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
ar4r2_scaffold_13491
Order: Thiotrichales (50%)
4 3024 bp 44.91 1.00 89.98
ar4r2_scaffold_6356
Class: Gammaproteobacteria (50%)
8 7386 bp 46.01 1.00 90.27
ar4r2_scaffold_10500
Class: Gammaproteobacteria (50%)
4 3473 bp 44.83 1.00 90.27
ar4r2_scaffold_9060
Genus: Thiomicrospira (50%)
8 6039 bp 45.37 1.00 90.36
ar4r2_scaffold_27878
Species: Thioalkalimicrobium cyclicum (50%)
2 1612 bp 47.21 1.00 90.45
ar4r2_scaffold_2683
Order: Thiotrichales (50%)
10 10322 bp 45.14 1.00 90.45
ar4r2_scaffold_27970
Genus: Thiomicrospira (50%)
4 2682 bp 45.60 1.00 90.49
ar4r2_scaffold_3609
Class: Betaproteobacteria (60%)
10 11027 bp 42.05 1.00 90.51
ar4r2_scaffold_7133
Order: Thiotrichales (50%)
8 7765 bp 46.44 1.00 90.52
ar4r2_scaffold_22228
Species: Thiomicrospira crunogena (50%)
4 2349 bp 47.04 1.00 90.55
ar4r2_scaffold_8729
Order: Thiotrichales (61.54%)
13 11605 bp 46.75 1.00 90.58
ar4r2_scaffold_16473
Order: Thiotrichales (100%)
3 2807 bp 47.06 1.00 90.63
ar4r2_scaffold_9140
Species: Thioalkalimicrobium aerophilum (50%)
6 6346 bp 46.55 1.00 90.67
ar4r2_scaffold_3971
Class: Gammaproteobacteria (78.57%)
14 12727 bp 46.21 1.00 90.75
ar4r2_scaffold_10037
Order: Chromatiales (50%)
4 4761 bp 46.29 1.00 90.80
ar4r2_scaffold_7939
Phylum: Proteobacteria (50%)
6 4392 bp 44.97 1.00 90.89
ar4r2_scaffold_6664
Class: Gammaproteobacteria (80%)
5 4489 bp 44.13 1.00 90.96
ar4r2_scaffold_5384
Phylum: Proteobacteria (63.64%)
11 11351 bp 45.94 1.00 91.00
ar4r2_scaffold_17324
Phylum: Proteobacteria (50%)
6 3184 bp 45.98 1.00 91.02
ar4r2_scaffold_16619
Order: Thiotrichales (55.56%)
9 7318 bp 47.87 1.00 91.05
ar4r2_scaffold_17907
Order: Thiotrichales (66.67%)
3 2591 bp 45.93 1.00 91.12
ar4r2_scaffold_4325
Order: Thiotrichales (60%)
5 6432 bp 47.64 1.00 91.14
ar4r2_scaffold_3627
Phylum: Proteobacteria (80%)
10 12545 bp 46.63 1.00 91.16
ar4r2_scaffold_10052
Order: Thiotrichales (66.67%)
6 5697 bp 46.04 1.00 91.26
ar4r2_scaffold_3527
Order: Thiotrichales (50%)
8 9406 bp 46.16 1.00 91.28
ar4r2_scaffold_21700
Order: Thiotrichales (50%)
8 5493 bp 46.97 1.00 91.37
ar4r2_scaffold_13622
Species: Thiothrix nivea (50%)
4 3195 bp 48.36 1.00 91.46
ar4r2_scaffold_5979
Species: Thioalkalimicrobium aerophilum (60%)
5 5346 bp 45.59 1.00 91.53
ar4r2_scaffold_13150
Species: Thioalkalimicrobium cyclicum (100%)
3 2664 bp 45.42 1.00 91.55
ar4r2_scaffold_8102
Order: Thiotrichales (50%)
4 3846 bp 46.96 1.00 91.58
ar4r2_scaffold_28233
Class: Gammaproteobacteria (60%)
5 3606 bp 45.12 1.00 91.60
ar4r2_scaffold_8346
Class: Gammaproteobacteria (66.67%)
6 5841 bp 47.10 1.00 91.63
ar4r2_scaffold_10987
Species: Thioalkalimicrobium aerophilum (50%)
2 3496 bp 47.97 1.00 91.65
ar4r2_scaffold_6293
Class: Gammaproteobacteria (83.33%)
6 5703 bp 43.50 1.00 91.69
ar4r2_scaffold_4643
Order: Thiotrichales (58.33%)
12 10051 bp 45.99 1.00 91.69
ar4r2_scaffold_7135
Genus: Vibrio (50%)
6 6202 bp 42.21 1.00 91.76
ar4r2_scaffold_24089
Species: Simiduia agarivorans (50%)
2 3318 bp 44.18 1.00 91.77
ar4r2_scaffold_59305
Species: Thiothrix nivea (100%)
3 2091 bp 50.45 1.00 91.82
ar4r2_scaffold_14858
Order: Rhodocyclales (57.14%)
7 5192 bp 46.17 1.00 91.87
ar4r2_scaffold_10872
Order: Thiotrichales (60%)
5 4377 bp 47.43 1.00 91.91
ar4r2_scaffold_7746
Class: Gammaproteobacteria (60%)
10 5653 bp 46.88 1.00 91.92
ar4r2_scaffold_10351
Species: Thiomicrospira crunogena (75%)
4 4134 bp 47.24 1.00 91.94
ar4r2_scaffold_14052
Class: Gammaproteobacteria (60%)
5 5169 bp 47.13 1.00 91.99
ar4r2_scaffold_8716
Genus: Thiomicrospira (50%)
6 4040 bp 46.66 1.00 92.00
ar4r2_scaffold_14102
Species: Hydrogenovibrio marinus (50%)
6 6863 bp 46.93 1.00 92.06
ar4r2_scaffold_34179
Species: Thiothrix nivea (66.67%)
3 2219 bp 45.52 1.00 92.07
ar4r2_scaffold_17425
Species: Thioalkalimicrobium cyclicum (50%)
4 3198 bp 48.87 1.00 92.12
ar4r2_scaffold_7755
Order: Thiotrichales (58.33%)
12 9887 bp 46.29 1.00 92.15
ar4r2_scaffold_7708
Class: Gammaproteobacteria (60%)
10 8125 bp 46.98 1.00 92.20
ar4r2_scaffold_14633
Class: Gammaproteobacteria (50%)
6 4384 bp 44.78 1.00 92.27
Displaying items 101-150 of 381 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.