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S4JAR1_40

Alias: S4JAR1_36

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S4JAR1_40_1
unknown

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2..133
DNA (132bp) protein (44aa)
seg (db=Seg db_id=seg from=16 to=29)
S4JAR1_40_2
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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106..738
DNA (633bp) protein (211aa)
Ribosomal protein L1 n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHU4_9EURY (db=UNIREF evalue=4.0e-81 bit_score=303.0 identity=65.71 coverage=99.0521327014218)
50S ribosomal protein L1P
RIBOSOMAL_L1 (db=PatternScan db_id=PS01199 from=111 to=130 evalue=0.0 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
Ribosomal_L1 (db=HMMPfam db_id=PF00687 from=3 to=206 evalue=4.2e-44 interpro_id=IPR002143 interpro_description=Ribosomal protein L1 GO=Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396))
S4JAR1_40_3
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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748..1581
DNA (834bp) protein (278aa)
Ribosomal protein L10 n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHU5_9EURY (db=UNIREF evalue=2.0e-80 bit_score=302.0 identity=56.99 coverage=97.4820143884892)
rplP0; acidic ribosomal protein P0
60S ACIDIC RIBOSOMAL PROTEIN P0 (db=HMMPanther db_id=PTHR21141:SF3 from=5 to=248 evalue=6.2e-23)
60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER (db=HMMPanther db_id=PTHR21141 from=5 to=248 evalue=6.2e-23)
S4JAR1_40_4
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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1632..1934
DNA (303bp) protein (101aa)
rpl12p; 50S ribosomal protein L12P
seg (db=Seg db_id=seg from=63 to=93)
coiled-coil (db=Coil db_id=coil from=72 to=93 evalue=NA)
L21P_arch: 50S ribosomal protein L12P (db=HMMTigr db_id=TIGR03685 from=1 to=100 evalue=1.2e-38 interpro_id=IPR022295 interpro_description=Ribosomal protein L12, archaea GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translational elongation (GO:0006414))
S4JAR1_40_5
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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comp(1940..2830)
DNA (891bp) protein (297aa)
Putative uncharacterized protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DHU7_9EURY (db=UNIREF evalue=8.0e-23 bit_score=111.0 identity=29.74 coverage=75.4208754208754)
putative metal-dependent hydrolase
seg (db=Seg db_id=seg from=190 to=201)
seg (db=Seg db_id=seg from=258 to=281)
S4JAR1_40_6
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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comp(2873..3454)
DNA (582bp) protein (194aa)
Putative uncharacterized protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIT3_9EURY (db=UNIREF evalue=3.0e-30 bit_score=134.0 identity=37.44 coverage=96.9072164948454)
HAD-like (db=superfamily db_id=SSF56784 from=1 to=176 evalue=4.0e-06)
Putative uncharacterized protein {ECO:0000313|EMBL:EET89857.1}; TaxID=425595 species="Archaea; Parvarchaeota; Candidatus Micrarchaeum.;" source="Candidatus Micrarchaeum acidiphilum ARMAN-2.;"
S4JAR1_40_7
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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3626..4747
DNA (1122bp) protein (374aa)
DNA primase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIT4_9EURY (db=UNIREF evalue=3.0e-116 bit_score=422.0 identity=50.81 coverage=99.1978609625668)
hypothetical protein
Prim-pol domain (db=superfamily db_id=SSF56747 from=2 to=372 evalue=4.8e-57)
no description (db=Gene3D db_id=G3DSA:3.90.920.10 from=1 to=343 evalue=2.5e-45)
S4JAR1_40_8
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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4814..6034
DNA (1221bp) protein (407aa)
Putative uncharacterized protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIT5_9EURY (db=UNIREF evalue=2.0e-155 bit_score=551.0 identity=68.72 coverage=99.017199017199)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=318 to=340)
transmembrane_regions (db=TMHMM db_id=tmhmm from=295 to=314)
S4JAR1_40_9
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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6063..6383
DNA (321bp) protein (107aa)
Putative uncharacterized protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DID5_9EURY (db=UNIREF evalue=3.0e-10 bit_score=67.4 identity=45.71 coverage=94.392523364486)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=80)
seg (db=Seg db_id=seg from=66 to=81)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
S4JAR1_40_10
unknown

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6437..7297
DNA (861bp) protein (287aa)
6437..7297 + (rbs_motif=GGTG rbs_spacer=5bp)
S4JAR1_40_11
Sulfolobus tokodaii, Sulfolobus, Sulfolobales, Thermoprotei, Crenarchaeota, Archaea

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7353..7850
DNA (498bp) protein (166aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) RepID=Q96ZM2_SULTO
Uncharacterized protein {ECO:0000313|EMBL:BAB66903.1}; TaxID=273063 species="Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus.;" source="Sulfolobus tokodaii (strain DSM 16
S4JAR1_40_12
unknown

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7952..8095
DNA (144bp) protein (48aa)
7952..8095 + (rbs_motif=None rbs_spacer=None)
S4JAR1_40_13
unknown

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8104..8565
DNA (462bp) protein (154aa)
8104..8565 + (rbs_motif=None rbs_spacer=None)
S4JAR1_40_14
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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8592..8924
DNA (333bp) protein (111aa)
ribonuclease P protein subunit POP4 (EC:3.1.26.5)
UPF0086 (db=HMMPfam db_id=PF01868 from=18 to=100 evalue=5.6e-24 interpro_id=IPR002730 interpro_description=Ribonuclease P/MRP, subunit p29, eukaryotic/archaeal GO=Cellular Component: ribonuclease MRP complex (GO:0000172), Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease activity (GO:0004540), Biological Process: rRNA processing (GO:0006364), Biological Process: mRNA cleavage (GO:0006379), Biological Process: tRNA processing (GO:0008033), Cellular Component: ribonuclease P compl
Rof/RNase P subunit-like (db=superfamily db_id=SSF101744 from=14 to=105 evalue=5.5e-23 interpro_id=IPR002730 interpro_description=Ribonuclease P/MRP, subunit p29, eukaryotic/archaeal GO=Cellular Component: ribonuclease MRP complex (GO:0000172), Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease activity (GO:0004540), Biological Process: rRNA processing (GO:0006364), Biological Process: mRNA cleavage (GO:0006379), Biological Process: tRNA processing (GO:0008033), Cellular Componen
no description (db=HMMSmart db_id=SM00538 from=15 to=105 evalue=1.1e-20 interpro_id=IPR002730 interpro_description=Ribonuclease P/MRP, subunit p29, eukaryotic/archaeal GO=Cellular Component: ribonuclease MRP complex (GO:0000172), Molecular Function: RNA binding (GO:0003723), Molecular Function: ribonuclease activity (GO:0004540), Biological Process: rRNA processing (GO:0006364), Biological Process: mRNA cleavage (GO:0006379), Biological Process: tRNA processing (GO:0008033), Cellular Component: ribonuclease
S4JAR1_40_15
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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9053..9349
DNA (297bp) protein (99aa)
Ribosomal protein S17 n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIT7_9EURY (db=UNIREF evalue=1.0e-38 bit_score=161.0 identity=76.84 coverage=94.9494949494949)
30S ribosomal protein S17
arch_S17P: archaeal ribosomal protein S17P (db=HMMTigr db_id=TIGR03630 from=1 to=93 evalue=9.8e-37 interpro_id=IPR019978 interpro_description=Ribosomal protein S17, archaeal GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER (db=HMMPanther db_id=PTHR10744 from=2 to=91 evalue=7.9e-25 interpro_id=IPR000266 interpro_description=Ribosomal protein S17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S4JAR1_40_16
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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9351..9749
DNA (399bp) protein (133aa)
Ribosomal protein L14b/L23e n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIT8_9EURY (db=UNIREF evalue=8.0e-60 bit_score=232.0 identity=84.85 coverage=98.4962406015038)
rpl14p; 50S ribosomal protein L14P
Ribosomal protein L14 (db=superfamily db_id=SSF50193 from=1 to=132 evalue=1.1e-39 interpro_id=IPR000218 interpro_description=Ribosomal protein L14b/L23e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S/60S RIBOSOMAL PROTEIN L14/L23 (db=HMMPanther db_id=PTHR11761 from=3 to=132 evalue=5.2e-37 interpro_id=IPR000218 interpro_description=Ribosomal protein L14b/L23e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S4JAR1_40_17

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9749..10180
DNA (432bp) protein (144aa)
rpl24p; 50S ribosomal protein L24
seg (db=Seg db_id=seg from=52 to=70)
rplX_A_E: ribosomal protein L24 (db=HMMTigr db_id=TIGR01080 from=4 to=121 evalue=2.4e-29 interpro_id=IPR005756 interpro_description=Ribosomal protein L26, eukaryotic/archaeal GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
no description (db=Gene3D db_id=G3DSA:2.30.30.200 from=4 to=124 evalue=8.5e-28 interpro_id=IPR014723 interpro_description=Ribosomal protein L24, SH3-like)
S4JAR1_40_18

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10158..10841
DNA (684bp) protein (228aa)
RNA-binding S4 domain protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIU0_9EURY (db=UNIREF evalue=4.0e-40 bit_score=167.0 identity=39.73 coverage=95.1754385964912)
30S ribosomal protein S4
30S/40S RIBOSOMAL PROTEIN S4 (db=HMMPanther db_id=PTHR11581 from=5 to=227 evalue=5.9e-18 interpro_id=IPR000876 interpro_description=Ribosomal protein S4e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RS4NT (db=HMMPfam db_id=PF08071 from=4 to=40 evalue=2.0e-08 interpro_id=IPR013843 interpro_description=Ribosomal protein S4e, N-terminal)
S4JAR1_40_19
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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10847..11398
DNA (552bp) protein (184aa)
50S ribosomal protein L5 n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIU1_9EURY (db=UNIREF evalue=2.0e-50 bit_score=201.0 identity=61.14 coverage=94.0217391304348)
rpl5p; 50S ribosomal protein L5
Ribosomal protein L5 (db=superfamily db_id=SSF55282 from=12 to=178 evalue=4.6e-35 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.1440.10 from=3 to=180 evalue=9.0e-34 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S4JAR1_40_20

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11395..11553
DNA (159bp) protein (53aa)
rps14P; 30S ribosomal protein S14
Ribosomal_S14 (db=HMMPfam db_id=PF00253 from=4 to=51 evalue=1.3e-13 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR12010 from=11 to=52 evalue=1.7e-12)
SUBFAMILY NOT NAMED (db=HMMPanther db_id=PTHR12010:SF2 from=11 to=52 evalue=1.7e-12)
S4JAR1_40_21
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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11558..11941
DNA (384bp) protein (128aa)
Ribosomal protein S8 n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIU2_9EURY (db=UNIREF evalue=4.0e-45 bit_score=183.0 identity=64.57 coverage=98.4375)
rps8p; 30S ribosomal protein S8P
RIBOSOMAL_S8 (db=PatternScan db_id=PS00053 from=97 to=114 evalue=0.0 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S8 (db=superfamily db_id=SSF56047 from=1 to=127 evalue=2.6e-32 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S4JAR1_40_22
Candidatus Micrarchaeum acidiphilum, Candidatus Micrarchaeum, Parvarchaeota, Archaea

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11972..12496
DNA (525bp) protein (175aa)
Ribosomal protein L6 n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIU3_9EURY (db=UNIREF evalue=4.0e-51 bit_score=203.0 identity=55.49 coverage=98.2857142857143)
rpl6p; 50S ribosomal protein L6P
60S/50S RIBOSOMAL PROTEIN L6/L9 (db=HMMPanther db_id=PTHR11655 from=4 to=174 evalue=2.6e-25 interpro_id=IPR000702 interpro_description=Ribosomal protein L6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S RIBOSOMAL PROTEIN L6P (db=HMMPanther db_id=PTHR11655:SF1 from=4 to=174 evalue=2.6e-25)
Displaying 22 items

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