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AMDSBA1_9

Alias: AMDSBA1_C8

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Displaying items 31-60 of 102 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_9_31
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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29228..29854
DNA (627bp) protein (209aa)
50S ribosomal protein L4
50S ribosomal protein L4 n=2 Tax=Thermosipho RepID=RL4_THEAB (db=UNIREF evalue=1.6e-37 bit_score=161.8 identity=41.2 coverage=98.56459330143541)
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=2 to=207 evalue=7.4e-76 interpro_id=IPR023574 interpro_description=Ribosomal protein L4 domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L4 (db=HMMPanther db_id=PTHR10746:SF2 from=18 to=207 evalue=1.7e-74)
AMDSBA1_9_32
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


29851..30138
DNA (288bp) protein (96aa)
rplW; 50S ribosomal protein L25
50S ribosomal protein L23, chloroplastic n=1 Tax=Zygnema circumcarinatum RepID=RK23_ZYGCR (db=UNIREF evalue=1.6e-08 bit_score=64.3 identity=40.6 coverage=70.83333333333334)
RIBOSOMAL_L23 (db=PatternScan db_id=PS00050 from=77 to=92 evalue=0.0 interpro_id=IPR001014 interpro_description=Ribosomal protein L23/L25, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
(db=HMMPfam db_id=PF00276 from=5 to=93 evalue=5.0e-30 interpro_id=IPR013025 interpro_description=Ribosomal protein L25/L23 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_33
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


30158..30994
DNA (837bp) protein (279aa)
50S ribosomal protein L2
50S ribosomal protein L2
50S ribosomal protein L2 n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=D2Z916_9BACT (db=UNIREF evalue=1.3e-95 bit_score=355.1 identity=62.0 coverage=97.84946236559139)
AMDSBA1_9_34
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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30998..31282
DNA (285bp) protein (95aa)
30S ribosomal protein S19
30S ribosomal protein S19 n=5 Tax=Actinomycetales RepID=RS19_ACIC1 (db=UNIREF evalue=1.0e-28 bit_score=131.3 identity=62.2 coverage=93.6842105263158)
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=53 to=77 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
rpsS_bact: ribosomal protein S19 (db=HMMTigr db_id=TIGR01050 from=1 to=89 evalue=1.3e-57 interpro_id=IPR005732 interpro_description=Ribosomal protein S19, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
AMDSBA1_9_35
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


31298..31651
DNA (354bp) protein (118aa)
50S ribosomal protein L22
50S ribosomal protein L22 n=2 Tax=Sulfobacillus acidophilus RepID=G8TXG2_9FIRM (db=UNIREF evalue=1.9e-48 bit_score=197.2 identity=81.2 coverage=98.30508474576271)
RIBOSOMAL_L22 (db=PatternScan db_id=PS00464 from=87 to=111 evalue=0.0 interpro_id=IPR018260 interpro_description=Ribosomal protein L22/L17, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplV_bact: ribosomal protein L22 (db=HMMTigr db_id=TIGR01044 from=9 to=111 evalue=3.4e-55 interpro_id=IPR005727 interpro_description=Ribosomal protein L22, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
AMDSBA1_9_36
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


31661..32338
DNA (678bp) protein (226aa)
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 n=1 Tax=Acholeplasma axanthum RepID=RS3_ACHAX (db=UNIREF evalue=2.5e-52 bit_score=211.1 identity=44.2 coverage=97.78761061946902)
coiled-coil (db=Coil db_id=coil from=85 to=106 evalue=NA)
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=165 to=199 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_37
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


32341..32775
DNA (435bp) protein (145aa)
50S ribosomal protein L16
50S ribosomal protein L16 n=11 Tax=Peptostreptococcaceae RepID=RL16_CLOD6 (db=UNIREF evalue=1.6e-52 bit_score=211.1 identity=72.1 coverage=93.10344827586206)
rplP_bact: ribosomal protein L16 (db=HMMTigr db_id=TIGR01164 from=2 to=127 evalue=2.2e-90 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S/60S RIBOSOMAL PROTEIN L16 (db=HMMPanther db_id=PTHR12220 from=1 to=136 evalue=1.7e-64 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
AMDSBA1_9_38
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


32759..32968
DNA (210bp) protein (70aa)
rpmC; 50S ribosomal protein L29
50S ribosomal protein L29 n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=RL29_CORK4 (db=UNIREF evalue=2.5e-11 bit_score=73.2 identity=63.8 coverage=81.42857142857143)
coiled-coil (db=Coil db_id=coil from=6 to=41 evalue=NA)
RIBOSOMAL_L29 (db=PatternScan db_id=PS00579 from=41 to=55 evalue=0.0 interpro_id=IPR018254 interpro_description=Ribosomal protein L29, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_39
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


32982..33245
DNA (264bp) protein (88aa)
30S ribosomal protein S17
30S ribosomal protein S17 n=4 Tax=Aeromonas RepID=RS17_AERHH (db=UNIREF evalue=1.1e-16 bit_score=91.3 identity=46.8 coverage=88.63636363636364)
RIBOSOMAL_S17 (db=PatternScan db_id=PS00056 from=59 to=71 evalue=0.0 interpro_id=IPR019979 interpro_description=Ribosomal protein S17, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S17_bact: 30S ribosomal protein S17 (db=HMMTigr db_id=TIGR03635 from=8 to=79 evalue=2.2e-46 interpro_id=IPR019984 interpro_description=Ribosomal protein S17, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_40
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


33298..33669
DNA (372bp) protein (124aa)
50S ribosomal protein L14
50S ribosomal protein L14, chloroplastic n=1 Tax=Adiantum capillus-veneris RepID=RK14_ADICA (db=UNIREF evalue=3.2e-33 bit_score=146.7 identity=58.5 coverage=97.58064516129032)
seg (db=Seg db_id=seg from=49 to=63)
RIBOSOMAL_L14 (db=PatternScan db_id=PS00049 from=60 to=86 evalue=0.0 interpro_id=IPR019972 interpro_description=Ribosomal protein L14 conserved site)
AMDSBA1_9_41
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


33702..34013
DNA (312bp) protein (104aa)
50S ribosomal protein L24 n=2 Tax=Sulfobacillus acidophilus RepID=G8TXG8_9FIRM (db=UNIREF evalue=2.2e-43 bit_score=180.3 identity=78.6 coverage=98.07692307692307)
50S ribosomal protein L24
RIBOSOMAL_L24 (db=PatternScan db_id=PS01108 from=6 to=23 evalue=0.0 interpro_id=IPR005825 interpro_description=Ribosomal protein L24/L26, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=1 to=102 evalue=8.8e-53 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_42
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


34042..34596
DNA (555bp) protein (185aa)
50S ribosomal protein L5
50S ribosomal protein L5 n=5 Tax=Dehalococcoides mccartyi RepID=RL5_DEHE1 (db=UNIREF evalue=1.0e-56 bit_score=225.3 identity=60.2 coverage=94.05405405405406)
seg (db=Seg db_id=seg from=27 to=44)
RIBOSOMAL_L5 (db=PatternScan db_id=PS00358 from=60 to=76 evalue=0.0 interpro_id=IPR020929 interpro_description=Ribosomal protein L5, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_43
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


34607..34792
DNA (186bp) protein (62aa)
30S ribosomal protein S14
30S ribosomal protein S14 type Z n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=RS14Z_ALKMQ (db=UNIREF evalue=6.4e-19 bit_score=98.2 identity=68.9 coverage=96.7741935483871)
Glucocorticoid receptor-like (DNA-binding domain) (db=superfamily db_id=SSF57716 from=2 to=61 evalue=6.6e-23)
RIBOSOMAL_S14 (db=PatternScan db_id=PS00527 from=23 to=45 evalue=0.0 interpro_id=IPR018271 interpro_description=Ribosomal protein S14, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_44
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


34809..35201
DNA (393bp) protein (131aa)
30S ribosomal protein S8 n=2 Tax=Sulfobacillus acidophilus RepID=G8TXH1_9FIRM (db=UNIREF evalue=8.7e-58 bit_score=228.4 identity=84.6 coverage=98.47328244274809)
30S ribosomal protein S8
RIBOSOMAL_S8 (db=PatternScan db_id=PS00053 from=100 to=117 evalue=0.0 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S8 (db=HMMPanther db_id=PTHR11758 from=1 to=130 evalue=3.8e-57 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_45
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


35230..35769
DNA (540bp) protein (180aa)
50S ribosomal protein L6P n=1 Tax=Methanospirillum hungatei JF-1 RepID=RL6_METHJ (db=UNIREF evalue=3.3e-07 bit_score=60.8 identity=27.3 coverage=83.33333333333334)
RIBOSOMAL_L6_1 (db=PatternScan db_id=PS00525 from=154 to=162 evalue=0.0 interpro_id=IPR002358 interpro_description=Ribosomal protein L6, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L6_bact: ribosomal protein L6 (db=HMMTigr db_id=TIGR03654 from=2 to=176 evalue=1.6e-106 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
50S RIBOSOMAL PROTEIN L6 (db=HMMPanther db_id=PTHR11655:SF6 from=2 to=179 evalue=3.5e-74 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
AMDSBA1_9_46
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


35780..36145
DNA (366bp) protein (122aa)
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=RL18_CHLPB (db=UNIREF evalue=1.2e-21 bit_score=108.2 identity=49.6 coverage=88.52459016393442)
L18_bact: ribosomal protein L18 (db=HMMTigr db_id=TIGR00060 from=7 to=121 evalue=1.8e-57 interpro_id=IPR004389 interpro_description=Ribosomal protein L18, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
(db=HMMPfam db_id=PF00861 from=7 to=121 evalue=1.7e-39 interpro_id=IPR005484 interpro_description=Ribosomal protein L18/L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_47
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


36163..36696
DNA (534bp) protein (178aa)
30S ribosomal protein S5
30S ribosomal protein S5 n=5 Tax=Arthrobacter RepID=RS5_ARTS2 (db=UNIREF evalue=4.2e-47 bit_score=193.4 identity=64.1 coverage=87.07865168539325)
RIBOSOMAL_S5 (db=PatternScan db_id=PS00585 from=34 to=66 evalue=0.0 interpro_id=IPR018192 interpro_description=Ribosomal protein S5, N-terminal, conserved site)
rpsE_bact: ribosomal protein S5 (db=HMMTigr db_id=TIGR01021 from=14 to=169 evalue=9.7e-95 interpro_id=IPR005712 interpro_description=Ribosomal protein S5, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
AMDSBA1_9_48
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


36689..36892
DNA (204bp) protein (68aa)
Ribosomal protein L30p (db=HMMPIR db_id=PIRSF002211 from=1 to=60 evalue=5.7e-30 interpro_id=IPR005996 interpro_description=Ribosomal protein L30, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
rpmD_bact: ribosomal protein L30 (db=HMMTigr db_id=TIGR01308 from=4 to=58 evalue=4.0e-24 interpro_id=IPR005996 interpro_description=Ribosomal protein L30, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal protein L30p/L7e (db=superfamily db_id=SSF55129 from=1 to=60 evalue=1.4e-18 interpro_id=IPR016082 interpro_description=Ribosomal protein L30, ferredoxin-like fold domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.1390.20 from=1 to=60 evalue=7.1e-18 interpro_id=IPR016082 interpro_description=Ribosomal protein L30, ferredoxin-like fold domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_49
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


36889..37326
DNA (438bp) protein (146aa)
50S ribosomal protein L15
50S ribosomal protein L15 n=11 Tax=Comamonadaceae RepID=RL15_ACIAC (db=UNIREF evalue=1.0e-22 bit_score=112.1 identity=46.5 coverage=95.2054794520548)
seg (db=Seg db_id=seg from=8 to=34)
rplO_bact: ribosomal protein L15 (db=HMMTigr db_id=TIGR01071 from=2 to=143 evalue=2.2e-70 interpro_id=IPR005749 interpro_description=Ribosomal protein L15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
AMDSBA1_9_50
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


37328..38608
DNA (1281bp) protein (427aa)
Protein translocase subunit SecY n=2 Tax=Sulfobacillus acidophilus RepID=G8TXH7_9FIRM (db=UNIREF evalue=1.3e-198 bit_score=698.0 identity=78.4 coverage=99.29742388758783)
preprotein translocase subunit SecY
preprotein translocase subunit SecY
seg (db=Seg db_id=seg from=117 to=128)
AMDSBA1_9_51
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38622..39275
DNA (654bp) protein (218aa)
adk; adenylate kinase
Adenylate kinase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=KAD_ACHLI (db=UNIREF evalue=2.2e-50 bit_score=204.5 identity=46.0 coverage=96.3302752293578)
ADENYLATE_KINASE (db=PatternScan db_id=PS00113 from=81 to=92 evalue=0.0 interpro_id=IPR000850 interpro_description=Adenylate kinase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: nucleobase-containing compound metabolic process (GO:0006139), Molecular Function: nucleobase-containing compound kinase activity (GO:0019205))
adk: adenylate kinases (db=HMMTigr db_id=TIGR01351 from=2 to=213 evalue=2.1e-107 interpro_id=IPR006259 interpro_description=Adenylate kinase, subfamily GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: phosphotransferase activity, phosphate group as acceptor (GO:0016776), Molecular Function: nucleotide kinase activity (GO:0019201), Biological Process: nucleotide phosphorylation (GO:0046939))
AMDSBA1_9_52
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39268..40020
DNA (753bp) protein (251aa)
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase 1 n=46 Tax=Mycobacterium tuberculosis complex RepID=AMPM1_MYCTU (db=UNIREF evalue=3.7e-57 bit_score=227.3 identity=48.4 coverage=98.00796812749005)
PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P) (db=HMMPanther db_id=PTHR10804 from=54 to=250 evalue=4.4e-85)
MAP_1 (db=PatternScan db_id=PS00680 from=166 to=184 evalue=0.0 interpro_id=IPR002467 interpro_description=Peptidase M24A, methionine aminopeptidase, subfamily 1 GO=Molecular Function: aminopeptidase activity (GO:0004177), Biological Process: proteolysis (GO:0006508), Molecular Function: metalloexopeptidase activity (GO:0008235))
AMDSBA1_9_53
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40136..40354
DNA (219bp) protein (73aa)
translation initiation factor 1 (bIF-1)
Translation initiation factor IF-1 2 n=4 Tax=Clostridia RepID=IF12_SYMTH (db=UNIREF evalue=8.1e-29 bit_score=131.3 identity=84.7 coverage=97.26027397260275)
infA: translation initiation factor IF-1 (db=HMMTigr db_id=TIGR00008 from=3 to=71 evalue=5.7e-46 interpro_id=IPR004368 interpro_description=Translation initiation factor IF-1 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=71 evalue=4.4e-32 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
AMDSBA1_9_54
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40381..40494
DNA (114bp) protein (38aa)
50S ribosomal protein L36
RIBOSOMAL_L36 (db=PatternScan db_id=PS00828 from=11 to=36 evalue=0.0 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
(db=HMMPfam db_id=PF00444 from=1 to=37 evalue=4.3e-21 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR18804 from=1 to=37 evalue=3.7e-20 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_55
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


40527..40898
DNA (372bp) protein (124aa)
rpsM; 30S ribosomal protein S13
30S ribosomal protein S13, chloroplastic n=1 Tax=Cyanidioschyzon merolae RepID=RR13_CYAME (db=UNIREF evalue=8.6e-31 bit_score=138.7 identity=52.9 coverage=95.16129032258065)
RIBOSOMAL_S13_1 (db=PatternScan db_id=PS00646 from=88 to=101 evalue=0.0 interpro_id=IPR018269 interpro_description=Ribosomal protein S13, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
bact_S13: 30S ribosomal protein S13 (db=HMMTigr db_id=TIGR03631 from=3 to=115 evalue=4.9e-78 interpro_id=IPR019980 interpro_description=Ribosomal protein S13, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_56
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


40938..41333
DNA (396bp) protein (132aa)
30S ribosomal protein S11
30S ribosomal protein S11 n=11 Tax=Thermoanaerobacteraceae RepID=RS11_THEP3 (db=UNIREF evalue=1.4e-50 bit_score=204.5 identity=76.0 coverage=96.96969696969697)
seg (db=Seg db_id=seg from=64 to=76)
seg (db=Seg db_id=seg from=5 to=20)
AMDSBA1_9_57
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


41358..41984
DNA (627bp) protein (209aa)
30S ribosomal protein S4
30S ribosomal protein S4 n=1 Tax=Gloeobacter violaceus PCC 7421 RepID=RS4_GLOVI (db=UNIREF evalue=1.6e-61 bit_score=241.5 identity=58.0 coverage=98.08612440191388)
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=96 to=120 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=3 to=207 evalue=1.7e-104 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
AMDSBA1_9_58
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

42019..42987
DNA (969bp) protein (323aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=RPOA_ALKMQ (db=UNIREF evalue=1.5e-111 bit_score=408.3 identity=65.4 coverage=97.21362229102168)
seg (db=Seg db_id=seg from=298 to=315)
seg (db=Seg db_id=seg from=114 to=127)
AMDSBA1_9_59
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


43009..43353
DNA (345bp) protein (115aa)
50S ribosomal protein L17P
50S ribosomal protein L17 n=2 Tax=Sulfobacillus acidophilus RepID=G8TXI6_9FIRM (db=UNIREF evalue=5.5e-48 bit_score=195.7 identity=85.1 coverage=98.26086956521739)
RIBOSOMAL_L17 (db=PatternScan db_id=PS01167 from=32 to=54 evalue=0.0 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L17: ribosomal protein L17 (db=HMMTigr db_id=TIGR00059 from=3 to=114 evalue=1.1e-57 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_60
Weissella cibaria, Weissella, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

43359..44150
DNA (792bp) protein (264aa)
ABC transporter-like protein
seg (db=Seg db_id=seg from=140 to=155)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=3 to=211 evalue=1.2e-42)
COBALT ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF22 from=3 to=211 evalue=1.2e-42)
Displaying items 31-60 of 102 in total

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