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AMDSBA1_9

Alias: AMDSBA1_C8

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Displaying items 1-30 of 102 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_9_1
unknown

Not on your lists

2..100
DNA (99bp) protein (33aa)
2..100 + ( gc_cont=0.545)
AMDSBA1_9_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

205..1329
DNA (1125bp) protein (375aa)
yhdJ; DNA methylase N-4/N-6 domain-containing protein
Putative uncharacterized protein n=2 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GWS8_9EURY (db=UNIREF evalue=2.7e-11 bit_score=75.5 identity=38.3 coverage=28.26666666666667)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=87 to=368 evalue=3.2e-52)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=92 to=368 evalue=4.5e-49)
AMDSBA1_9_3
unknown

Not on your lists

2852..3169
DNA (318bp) protein (106aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA1_9_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3228..3857
DNA (630bp) protein (210aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TS59_9FIRM (db=UNIREF evalue=1.3e-82 bit_score=311.6 identity=70.0 coverage=96.19047619047619)
seg (db=Seg db_id=seg from=13 to=32)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=36)
AMDSBA1_9_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3886..4704
DNA (819bp) protein (273aa)
cytochrome c oxidase subunit II
cytochrome c oxidase subunit II
Cytochrome c oxidase subunit II n=2 Tax=Sulfobacillus acidophilus RepID=G8TS60_9FIRM (db=UNIREF evalue=2.7e-93 bit_score=347.4 identity=61.4 coverage=96.33699633699634)
AMDSBA1_9_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4744..6612
DNA (1869bp) protein (623aa)
CoxA
Cytochrome c oxidase n=1 Tax=Sagittula stellata E-37 RepID=A3K8R0_9RHOB (db=UNIREF evalue=3.5e-72 bit_score=278.5 identity=32.9 coverage=79.93579454253612)
transmembrane_regions (db=TMHMM db_id=tmhmm from=496 to=518)
transmembrane_regions (db=TMHMM db_id=tmhmm from=541 to=563)
AMDSBA1_9_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6676..7221
DNA (546bp) protein (182aa)
cytochrome c oxidase subunit III
Cytochrome c oxidase, subunit III n=2 Tax=Sulfobacillus acidophilus RepID=G8TS62_9FIRM (db=UNIREF evalue=1.3e-46 bit_score=191.8 identity=52.3 coverage=93.4065934065934)
transmembrane_regions (db=TMHMM db_id=tmhmm from=118 to=140)
transmembrane_regions (db=TMHMM db_id=tmhmm from=161 to=180)
AMDSBA1_9_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7250..7462
DNA (213bp) protein (71aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ01_9FIRM (db=UNIREF evalue=7.4e-11 bit_score=71.6 identity=49.3 coverage=90.14084507042254)
transmembrane_regions (db=TMHMM db_id=tmhmm from=23 to=45)
Uncharacterized protein {ECO:0000313|EMBL:AEJ41381.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfo
AMDSBA1_9_9
unknown

Not on your lists

7459..8310
DNA (852bp) protein (284aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=30 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=79)
transmembrane_regions (db=TMHMM db_id=tmhmm from=134 to=156)
transmembrane_regions (db=TMHMM db_id=tmhmm from=161 to=183)
AMDSBA1_9_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8845..9216
DNA (372bp) protein (124aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
transmembrane_regions (db=TMHMM db_id=tmhmm from=61 to=83)
transmembrane_regions (db=TMHMM db_id=tmhmm from=90 to=112)
AMDSBA1_9_11
unknown

Not on your lists

comp(9207..9599)
DNA (393bp) protein (131aa)
seg (db=Seg db_id=seg from=24 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=107 to=129)
transmembrane_regions (db=TMHMM db_id=tmhmm from=78 to=95)
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=63)
AMDSBA1_9_12
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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9901..10590
DNA (690bp) protein (230aa)
rpe; ribulose-phosphate 3-epimerase
Ribulose-phosphate 3-epimerase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZNG9_9BACT (db=UNIREF evalue=2.8e-51 bit_score=207.6 identity=47.2 coverage=91.30434782608695)
RIBUL_P_3_EPIMER_2 (db=PatternScan db_id=PS01086 from=135 to=157 evalue=0.0 interpro_id=IPR000056 interpro_description=Ribulose-phosphate 3-epimerase GO=Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750), Biological Process: carbohydrate metabolic process (GO:0005975))
RIBUL_P_3_EPIMER_1 (db=PatternScan db_id=PS01085 from=33 to=47 evalue=0.0 interpro_id=IPR000056 interpro_description=Ribulose-phosphate 3-epimerase GO=Molecular Function: ribulose-phosphate 3-epimerase activity (GO:0004750), Biological Process: carbohydrate metabolic process (GO:0005975))
AMDSBA1_9_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10658..11596
DNA (939bp) protein (313aa)
spoVK; protein CbbX rbh
spoVK; protein CbbX rbh
Protein CbbX n=6 Tax=Rhodobacter sphaeroides RepID=CBBX_RHOSH (db=UNIREF evalue=5.2e-109 bit_score=399.8 identity=68.0 coverage=96.48562300319489)
AMDSBA1_9_14
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


12081..12230
DNA (150bp) protein (50aa)
50S ribosomal protein L33
50S ribosomal protein L33 n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=RL33_ALKMQ (db=UNIREF evalue=5.5e-13 bit_score=78.2 identity=59.2 coverage=96.0)
RIBOSOMAL_L33 (db=PatternScan db_id=PS00582 from=17 to=36 evalue=0.0 interpro_id=IPR018264 interpro_description=Ribosomal protein L33, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
(db=HMMPfam db_id=PF00471 from=2 to=49 evalue=6.2e-22 interpro_id=IPR001705 interpro_description=Ribosomal protein L33 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12260..12472
DNA (213bp) protein (71aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
SECE_SEC61G (db=PatternScan db_id=PS01067 from=18 to=46 evalue=0.0 interpro_id=IPR001901 interpro_description=Protein translocase complex, SecE/Sec61-gamma subunit GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
(db=HMMPfam db_id=PF00584 from=15 to=69 evalue=6.3e-21 interpro_id=IPR001901 interpro_description=Protein translocase complex, SecE/Sec61-gamma subunit GO=Biological Process: protein targeting (GO:0006605), Biological Process: intracellular protein transport (GO:0006886), Cellular Component: membrane (GO:0016020))
secE_bact: preprotein translocase, SecE sub (db=HMMTigr db_id=TIGR00964 from=15 to=70 evalue=9.6e-13 interpro_id=IPR005807 interpro_description=SecE subunit of protein translocation complex GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
AMDSBA1_9_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12435..13073
DNA (639bp) protein (213aa)
nusG; NusG antitermination factor
Transcription antitermination protein nusG n=2 Tax=Dictyoglomus RepID=B5YEY1_DICT6 (db=UNIREF evalue=2.3e-36 bit_score=157.9 identity=42.0 coverage=81.69014084507043)
seg (db=Seg db_id=seg from=79 to=96)
nusG: transcription termination/antiterminat (db=HMMTigr db_id=TIGR00922 from=41 to=211 evalue=2.7e-82 interpro_id=IPR001062 interpro_description=Transcription antitermination protein, NusG GO=Biological Process: regulation of transcription elongation, DNA-dependent (GO:0032784))
AMDSBA1_9_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13111..13515
DNA (405bp) protein (135aa)
50S ribosomal protein L11
50S ribosomal protein L11, chloroplastic n=1 Tax=Cyanidium caldarium RepID=RK11_CYACA (db=UNIREF evalue=4.2e-39 bit_score=166.4 identity=57.3 coverage=96.29629629629629)
RIBOSOMAL_L11 (db=PatternScan db_id=PS00359 from=119 to=134 evalue=0.0 interpro_id=IPR020785 interpro_description=Ribosomal protein L11, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L11_bact: ribosomal protein L11 (db=HMMTigr db_id=TIGR01632 from=1 to=134 evalue=2.1e-94 interpro_id=IPR006519 interpro_description=Ribosomal protein L11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13563..14270
DNA (708bp) protein (236aa)
rplA; 50S ribosomal protein L1
50S ribosomal protein L1 n=1 Tax=Meiothermus ruber DSM 1279 RepID=D3PR59_MEIRD (db=UNIREF evalue=1.1e-63 bit_score=248.8 identity=51.3 coverage=96.61016949152543)
RIBOSOMAL_L1 (db=PatternScan db_id=PS01199 from=119 to=138 evalue=0.0 interpro_id=IPR023673 interpro_description=Ribosomal protein L1, conserved site)
rplA_bact: ribosomal protein L1 (db=HMMTigr db_id=TIGR01169 from=2 to=228 evalue=6.3e-150 interpro_id=IPR005878 interpro_description=Ribosomal protein L1, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
AMDSBA1_9_19
unknown

Not on your lists

14496..14672
DNA (177bp) protein (59aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=53)
seg (db=Seg db_id=seg from=4 to=15)
AMDSBA1_9_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15329..15847
DNA (519bp) protein (173aa)
50S ribosomal protein L10
50S ribosomal protein L10 n=1 Tax=Lactobacillus sanfranciscensis TMW 1.1304 RepID=G2KV20_LACSM (db=UNIREF evalue=1.9e-23 bit_score=114.8 identity=38.9 coverage=85.54913294797689)
RIBOSOMAL_L10 (db=PatternScan db_id=PS01109 from=6 to=40 evalue=0.0 interpro_id=IPR002363 interpro_description=Ribosomal protein L10, eubacterial, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
(db=HMMPfam db_id=PF00466 from=3 to=96 evalue=8.8e-26 interpro_id=IPR001790 interpro_description=Ribosomal protein L10/acidic P0 GO=Cellular Component: intracellular (GO:0005622), Biological Process: ribosome biogenesis (GO:0042254))
AMDSBA1_9_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15875..16264
DNA (390bp) protein (130aa)
50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 n=2 Tax=Rhodocyclaceae RepID=RL7_AZOSB (db=UNIREF evalue=9.0e-31 bit_score=138.7 identity=63.2 coverage=91.53846153846153)
seg (db=Seg db_id=seg from=104 to=126)
coiled-coil (db=Coil db_id=coil from=9 to=30 evalue=NA)
AMDSBA1_9_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16453..20103
DNA (3651bp) protein (1217aa)
rpoB; DNA-directed RNA polymerase subunit beta
rpoB; DNA-directed RNA polymerase subunit beta
DNA-directed RNA polymerase subunit beta n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=RPOB_ALKMQ (db=UNIREF evalue=0.0 bit_score=1233.0 identity=73.3 coverage=69.43303204601479)
AMDSBA1_9_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20124..23597
DNA (3474bp) protein (1158aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit gamma n=3 Tax=Cyanobacteria RepID=RPOC1_ACAM1 (db=UNIREF evalue=8.4e-213 bit_score=746.5 identity=65.4 coverage=46.373056994818654)
AMDSBA1_9_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23692..23958
DNA (267bp) protein (89aa)
ribosomal protein L7Ae/L30e/S12e/Gadd45
Putative ribosomal protein L7Ae-like n=1 Tax=Bacillus halodurans C-125 RepID=RXL7_BACHD (db=UNIREF evalue=3.5e-10 bit_score=69.7 identity=42.5 coverage=88.76404494382022)
L30e-like (db=superfamily db_id=SSF55315 from=7 to=87 evalue=4.1e-15)
(db=HMMPfam db_id=PF01248 from=7 to=81 evalue=8.6e-13 interpro_id=IPR004038 interpro_description=Ribosomal protein L7Ae/L30e/S12e/Gadd45)
AMDSBA1_9_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


23975..24367
DNA (393bp) protein (131aa)
30S ribosomal protein S12
30S ribosomal protein S12, chloroplastic n=1 Tax=Chara vulgaris RepID=RR12_CHAVU (db=UNIREF evalue=5.5e-44 bit_score=182.6 identity=74.4 coverage=91.6030534351145)
seg (db=Seg db_id=seg from=79 to=94)
seg (db=Seg db_id=seg from=13 to=23)
AMDSBA1_9_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


24392..24862
DNA (471bp) protein (157aa)
30S ribosomal protein S7
30S ribosomal protein S7, chloroplastic n=1 Tax=Chara vulgaris RepID=RR7_CHAVU (db=UNIREF evalue=9.5e-35 bit_score=152.1 identity=45.5 coverage=98.72611464968153)
rpsG_bact: ribosomal protein S7 (db=HMMTigr db_id=TIGR01029 from=3 to=156 evalue=3.5e-100 interpro_id=IPR005717 interpro_description=Ribosomal protein S7, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
RIBOSOMAL PROTEIN S7 (db=HMMPanther db_id=PTHR11205 from=1 to=156 evalue=3.8e-68 interpro_id=IPR000235 interpro_description=Ribosomal protein S7 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA1_9_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24916..26991
DNA (2076bp) protein (692aa)
translation elongation factor G
translation elongation factor G
Elongation factor G 1 n=2 Tax=Geobacter sulfurreducens RepID=EFG1_GEOSL (db=UNIREF evalue=5.8e-185 bit_score=653.3 identity=49.5 coverage=98.69942196531792)
AMDSBA1_9_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27032..28234
DNA (1203bp) protein (401aa)
tufA; translation elongation factor 1A (EF-1A/EF-Tu)
Elongation factor Tu 1 n=6 Tax=Peptococcaceae RepID=EFTU1_PELTS (db=UNIREF evalue=3.2e-196 bit_score=689.9 identity=81.9 coverage=99.00249376558602)
seg (db=Seg db_id=seg from=244 to=255)
AMDSBA1_9_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28253..28561
DNA (309bp) protein (103aa)
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10P n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RE31_ARCPA (db=UNIREF evalue=5.7e-12 bit_score=75.9 identity=42.4 coverage=94.1747572815534)
RIBOSOMAL_S10 (db=PatternScan db_id=PS00361 from=29 to=44 evalue=0.0 interpro_id=IPR018268 interpro_description=Ribosomal protein S10, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsJ_bact: ribosomal protein S10 (db=HMMTigr db_id=TIGR01049 from=4 to=102 evalue=2.2e-59 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
AMDSBA1_9_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28575..29225
DNA (651bp) protein (217aa)
50S ribosomal protein L3
50S ribosomal protein L3 n=3 Tax=Clostridium acetobutylicum RepID=RL3_CLOAB (db=UNIREF evalue=2.4e-52 bit_score=211.1 identity=48.8 coverage=94.47004608294931)
seg (db=Seg db_id=seg from=144 to=156)
RIBOSOMAL_L3 (db=PatternScan db_id=PS00474 from=102 to=125 evalue=0.0 interpro_id=IPR019926 interpro_description=Ribosomal protein L3, conserved site)
Displaying items 1-30 of 102 in total

View Taxonomy