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AMDSBA1_11

Alias: AMDSBA1_C10

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Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA1_11_1
Bacillus coagulans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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159..1607
-----------------
DNA (1449bp)
protein (483aa)
amino acid permease family protein
Uncharacterized protein n=1 Tax=Brachypodium distachyon RepID=I1HD70_BRADI (db=UNIREF evalue=1.6e-16 bit_score=93.2 identity=21.9 coverage=89.02691511387164)
transmembrane_regions (db=TMHMM db_id=tmhmm from=440 to=459)
seg (db=Seg db_id=seg from=60 to=75)
AMDSBA1_11_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1624..2895)
-----------------
DNA (1272bp)
protein (424aa)
diguanylate phosphodiesterase
Putative uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NU05_9RHOB (db=UNIREF evalue=9.2e-16 bit_score=90.5 identity=28.6 coverage=51.41509433962265)
(db=HMMPfam db_id=PF00563 from=11 to=232 evalue=3.1e-52 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
EAL domain-like (db=superfamily db_id=SSF141868 from=6 to=244 evalue=1.8e-49 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
AMDSBA1_11_3
unknown

Not on your lists

comp(3153..3908)
-----------------
DNA (756bp)
protein (252aa)
seg (db=Seg db_id=seg from=104 to=122)
seg (db=Seg db_id=seg from=55 to=73)
transmembrane_regions (db=TMHMM db_id=tmhmm from=218 to=240)
transmembrane_regions (db=TMHMM db_id=tmhmm from=186 to=208)
AMDSBA1_11_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4157..5245
-----------------
DNA (1089bp)
protein (363aa)
peptidase M24
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KDT0_9FIRM (db=UNIREF evalue=1.3e-42 bit_score=179.5 identity=40.5 coverage=63.36088154269972)
seg (db=Seg db_id=seg from=337 to=349)
PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P) (db=HMMPanther db_id=PTHR10804 from=181 to=356 evalue=7.0e-52)
AMDSBA1_11_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5331..5828
-----------------
DNA (498bp)
protein (166aa)
peroxiredoxin (EC:1.11.1.15)
Putative peroxiredoxin YgaF n=9 Tax=Bacillus RepID=BCP_BACSU (db=UNIREF evalue=2.6e-35 bit_score=154.1 identity=48.0 coverage=90.36144578313254)
BACTERIOFERRITIN COMIGRATORY PROTEIN (db=HMMPanther db_id=PTHR10681:SF5 from=9 to=162 evalue=1.1e-58)
PEROXIREDOXIN (db=HMMPanther db_id=PTHR10681 from=9 to=162 evalue=1.1e-58)
AMDSBA1_11_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5836..6486
-----------------
DNA (651bp)
protein (217aa)
endonuclease III (EC:4.2.99.18 3.2.2.-)
Endonuclease III n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS13_9FIRM (db=UNIREF evalue=2.5e-57 bit_score=227.6 identity=52.8 coverage=91.24423963133641)
ENDONUCLEASE_III_1 (db=PatternScan db_id=PS00764 from=186 to=202 evalue=0.0 interpro_id=IPR004035 interpro_description=Endonuclease III, iron-sulphur binding site GO=Molecular Function: endonuclease activity (GO:0004519), Biological Process: DNA repair (GO:0006281))
nth: endonuclease III (db=HMMTigr db_id=TIGR01083 from=2 to=193 evalue=2.4e-112 interpro_id=IPR005759 interpro_description=Endonuclease III/Nth GO=Molecular Function: DNA-(apurinic or apyrimidinic site) lyase activity (GO:0003906), Cellular Component: intracellular (GO:0005622), Biological Process: base-excision repair (GO:0006284))
AMDSBA1_11_7
unknown

Not on your lists

6486..6827
-----------------
DNA (342bp)
protein (114aa)
6486..6827 + ( gc_cont=0.500)
AMDSBA1_11_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6895..7761
-----------------
DNA (867bp)
protein (289aa)
Putative uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AA63_GEMAT (db=UNIREF evalue=2.2e-21 bit_score=108.6 identity=30.3 coverage=88.92733564013841)
seg (db=Seg db_id=seg from=3 to=19)
seg (db=Seg db_id=seg from=32 to=44)
seg (db=Seg db_id=seg from=76 to=84)
AMDSBA1_11_9
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7727..8815
-----------------
DNA (1089bp)
protein (363aa)
diguanylate cyclase
Diguanylate cyclase/phosphodiesterase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IYA0_9GAMM (db=UNIREF evalue=1.7e-15 bit_score=89.4 identity=28.5 coverage=46.5564738292011)
seg (db=Seg db_id=seg from=167 to=180)
GGDEF: diguanylate cyclase (GGDEF) domain (db=HMMTigr db_id=TIGR00254 from=201 to=359 evalue=1.3e-29 interpro_id=IPR000160 interpro_description=Diguanylate cyclase, predicted)
AMDSBA1_11_10
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

8812..9588
-----------------
DNA (777bp)
protein (259aa)
hypothetical protein
Hypothetical conserved protein n=1 Tax=uncultured gamma proteobacterium RepID=H5SAN6_9GAMM (db=UNIREF evalue=2.4e-35 bit_score=154.8 identity=35.0 coverage=95.75289575289575)
Putative uncharacterized protein n=1 Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M124_ACIFD
AMDSBA1_11_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10088..11434
-----------------
DNA (1347bp)
protein (449aa)
natural resistance-associated macrophage protein
natural resistance-associated macrophage protein
Natural resistance-associated macrophage protein n=3 Tax=Alicyclobacillus acidocaldarius RepID=C8WR30_ALIAD (db=UNIREF evalue=2.1e-180 bit_score=637.5 identity=71.1 coverage=95.99109131403118)
seg (db=Seg db_id=seg from=40 to=52)
AMDSBA1_11_12
Acidithiobacillus ferrooxidans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11482..11658
-----------------
DNA (177bp)
protein (59aa)
seg (db=Seg db_id=seg from=38 to=51)
transmembrane_regions (db=TMHMM db_id=tmhmm from=35 to=57)
AMDSBA1_11_13
Mycobacterium indicus pranii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12366..13589
-----------------
DNA (1224bp)
protein (408aa)
manganese transport protein mntH belonging to Nramp family
Metal ion transporter, nramp family n=1 Tax=Rickettsiella grylli RepID=A8PNI7_9COXI (db=UNIREF evalue=2.3e-80 bit_score=305.1 identity=42.3 coverage=97.05882352941177)
transmembrane_regions (db=TMHMM db_id=tmhmm from=287 to=309)
transmembrane_regions (db=TMHMM db_id=tmhmm from=324 to=346)
AMDSBA1_11_14
unknown

Not on your lists

14108..14311
-----------------
DNA (204bp)
protein (68aa)
14108..14311 + ( gc_cont=0.554)
AMDSBA1_11_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14934..16013
-----------------
DNA (1080bp)
protein (360aa)
glycoside hydrolase family protein
Predicted glycosyl hydrolase n=3 Tax=Eubacterium rectale RepID=D4JMX0_9FIRM (db=UNIREF evalue=1.5e-11 bit_score=76.3 identity=24.4 coverage=83.61111111111111)
seg (db=Seg db_id=seg from=74 to=91)
seg (db=Seg db_id=seg from=28 to=44)
AMDSBA1_11_16
unknown

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16435..16554
-----------------
DNA (120bp)
protein (40aa)
16435..16554 + ( gc_cont=0.533)
AMDSBA1_11_17
unknown

Not on your lists

16860..17207
-----------------
DNA (348bp)
protein (116aa)
16860..17207 + ( gc_cont=0.489)
AMDSBA1_11_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17634..18197
-----------------
DNA (564bp)
protein (188aa)
TQO small subunit DoxD
Aa3-type cytochrome, terminal oxidase n=1 Tax=Acidianus ambivalens RepID=Q8NKT7_ACIAM (db=UNIREF evalue=8.4e-30 bit_score=136.0 identity=39.7 coverage=90.95744680851064)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=147 to=169)
AMDSBA1_11_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18276..18821
-----------------
DNA (546bp)
protein (182aa)
TQO small subunit DoxA domain-containing protein
TQO small subunit DoxA domain-containing protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZA0_9FIRM (db=UNIREF evalue=7.6e-44 bit_score=182.6 identity=51.5 coverage=91.20879120879121)
(db=HMMPfam db_id=PF07680 from=43 to=174 evalue=5.0e-19 interpro_id=IPR011636 interpro_description=TQO small subunit DoxA)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8IA57_SULAT
AMDSBA1_11_20
Lysinibacillus sp. 13S34_air, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18900..19373)
-----------------
DNA (474bp)
protein (158aa)
transposase, IS607 family
ISSoc6, orfB transposase n=1 Tax=Synechococcus sp. JA-3-3Ab RepID=Q2JX41_SYNJA (db=UNIREF evalue=1.7e-15 bit_score=88.2 identity=34.0 coverage=87.34177215189874)
Transposase n=1 Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YRY6_LYNSP
AMDSBA1_11_21
unknown

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19898..20326
-----------------
DNA (429bp)
protein (143aa)
19898..20326 + ( gc_cont=0.538)
AMDSBA1_11_22
unknown

Not on your lists

20627..20992
-----------------
DNA (366bp)
protein (122aa)
20627..20992 + ( gc_cont=0.527)
AMDSBA1_11_23
unknown

Not on your lists

comp(21149..21718)
-----------------
DNA (570bp)
protein (190aa)
21149..21718 - ( gc_cont=0.584)
AMDSBA1_11_24
unknown

Not on your lists

22166..22579
-----------------
DNA (414bp)
protein (138aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=106 to=128)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=67)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
AMDSBA1_11_25
unknown

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comp(22474..22929)
-----------------
DNA (456bp)
protein (152aa)
seg (db=Seg db_id=seg from=75 to=87)
AMDSBA1_11_26
unknown

Not on your lists

23027..23194
-----------------
DNA (168bp)
protein (56aa)
23027..23194 + ( gc_cont=0.440)
AMDSBA1_11_27
unknown

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23217..23861
-----------------
DNA (645bp)
protein (215aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
Triger factor/SurA peptide-binding domain-like (db=superfamily db_id=SSF109998 from=49 to=161 evalue=2.5e-07 interpro_id=IPR008880 interpro_description=Trigger factor, C-terminal, bacterial GO=Biological Process: protein folding (GO:0006457), Biological Process: protein transport (GO:0015031))
AMDSBA1_11_28
unknown

Not on your lists

24383..24778
-----------------
DNA (396bp)
protein (132aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=74 to=96)
transmembrane_regions (db=TMHMM db_id=tmhmm from=101 to=123)
AMDSBA1_11_29
unknown

Not on your lists

comp(25288..25989)
-----------------
DNA (702bp)
protein (234aa)
25288..25989 - ( gc_cont=0.504)
AMDSBA1_11_30
unknown

Not on your lists

comp(28114..28569)
-----------------
DNA (456bp)
protein (152aa)
28114..28569 - ( gc_cont=0.579)
Displaying items 1-30 of 87 in total

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