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AMDSBA1_14

Alias: AMDSBA1_C13

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Displaying items 31-51 of 51 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_14_32

Not on your lists

38866..40299
DNA (1434bp) protein (478aa)
formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit
NADH-quinone oxidoreductase subunit M n=572 Tax=Enterobacteriaceae RepID=NUOM_ECO57 (db=UNIREF evalue=3.8e-26 bit_score=125.2 identity=24.1 coverage=95.81589958158996)
transmembrane_regions (db=TMHMM db_id=tmhmm from=193 to=215)
transmembrane_regions (db=TMHMM db_id=tmhmm from=60 to=82)
AMDSBA1_14_33
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40308..41867
DNA (1560bp) protein (520aa)
putative NADH dehydrogenase (EC:1.6.99.5)
NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Thermovirga lienii DSM 17291 RepID=G7V5M2_THELD (db=UNIREF evalue=4.9e-35 bit_score=154.8 identity=32.0 coverage=68.65384615384616)
HydB/Nqo4-like (db=superfamily db_id=SSF56762 from=172 to=519 evalue=2.6e-78)
NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT (db=HMMPanther db_id=PTHR11993 from=51 to=519 evalue=6.8e-73)
AMDSBA1_14_34

Not on your lists

41938..42657
DNA (720bp) protein (240aa)
NADH ubiquinone oxidoreductase, 20 kDa subunit
NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Burkholderia terrae BS001 RepID=I5CGV7_9BURK (db=UNIREF evalue=1.4e-32 bit_score=145.6 identity=45.8 coverage=58.75)
HydA/Nqo6-like (db=superfamily db_id=SSF56770 from=85 to=231 evalue=6.6e-41)
FORMATE HYDROGENLYASE 7 (db=HMMPanther db_id=PTHR11995:SF3 from=107 to=226 evalue=1.1e-39)
AMDSBA1_14_35
RLO_PLX_64_10, Bacteria

Not on your lists

42654..44786
DNA (2133bp) protein (711aa)
formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit
NADH dehydrogenase (Quinone) n=2 Tax=Rhodospirillum rubrum RepID=G2T7J2_RHORU (db=UNIREF evalue=1.5e-63 bit_score=250.0 identity=30.2 coverage=83.26300984528832)
transmembrane_regions (db=TMHMM db_id=tmhmm from=274 to=293)
transmembrane_regions (db=TMHMM db_id=tmhmm from=387 to=409)
AMDSBA1_14_36
unknown

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comp(45549..45989)
DNA (441bp) protein (147aa)
45549..45989 - ( gc_cont=0.499)
AMDSBA1_14_37
unknown

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comp(46611..46982)
DNA (372bp) protein (124aa)
46611..46982 - ( gc_cont=0.581)
AMDSBA1_14_38
unknown

Not on your lists

comp(47778..48686)
DNA (909bp) protein (303aa)
seg (db=Seg db_id=seg from=190 to=206)
seg (db=Seg db_id=seg from=216 to=228)
seg (db=Seg db_id=seg from=257 to=270)
AMDSBA1_14_39
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

49964..50170
DNA (207bp) protein (69aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Methanoregula boonei 6A8 RepID=A7I6K7_METB6 (db=UNIREF evalue=6.7e-17 bit_score=91.7 identity=67.2 coverage=91.30434782608695)
TIGR03833: conserved hypothetical protein (db=HMMTigr db_id=TIGR03833 from=5 to=66 evalue=5.2e-38 interpro_id=IPR019240 interpro_description=Protein of unknown function DUF2196)
(db=HMMPfam db_id=PF09962 from=5 to=65 evalue=5.9e-33 interpro_id=IPR019240 interpro_description=Protein of unknown function DUF2196)
AMDSBA1_14_40
unknown

Not on your lists

51012..51761
DNA (750bp) protein (250aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=220 to=242)
transmembrane_regions (db=TMHMM db_id=tmhmm from=188 to=210)
transmembrane_regions (db=TMHMM db_id=tmhmm from=146 to=168)
transmembrane_regions (db=TMHMM db_id=tmhmm from=120 to=142)
AMDSBA1_14_41
Bacillus thermotolerans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

52228..53814
DNA (1587bp) protein (529aa)
Hypothetical protein
Amidohydrolase 3 n=1 Tax=Meiothermus ruber DSM 1279 RepID=D3PMB2_MEIRD (db=UNIREF evalue=1.8e-13 bit_score=83.2 identity=31.3 coverage=36.48393194706994)
(db=HMMPfam db_id=PF07969 from=57 to=496 evalue=5.0e-67 interpro_id=IPR013108 interpro_description=Amidohydrolase 3)
Composite domain of metallo-dependent hydrolases (db=superfamily db_id=SSF51338 from=1 to=526 evalue=1.0e-09 interpro_id=IPR011059 interpro_description=Metal-dependent hydrolase, composite domain GO=Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds (GO:0016810))
AMDSBA1_14_42
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53868..54080
DNA (213bp) protein (71aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=26)
(db=HMMPfam db_id=PF11755 from=10 to=62 evalue=2.3e-20 interpro_id=IPR021741 interpro_description=Protein of unknown function DUF3311)
Uncharacterized protein {ECO:0000313|EMBL:KHQ99679.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
AMDSBA1_14_43
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54083..55555
DNA (1473bp) protein (491aa)
Na+/solute symporter
SSS sodium solute transporter superfamily n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXY5_DYAFD (db=UNIREF evalue=6.2e-08 bit_score=64.7 identity=21.8 coverage=83.70672097759673)
seg (db=Seg db_id=seg from=418 to=432)
transmembrane_regions (db=TMHMM db_id=tmhmm from=155 to=177)
AMDSBA1_14_44
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(55768..56232)
DNA (465bp) protein (155aa)
N-acetyltransferase GCN5
Putative acetyltransferase n=1 Tax=Sphingobium japonicum UT26S RepID=D4Z8Q5_SPHJU (db=UNIREF evalue=3.8e-20 bit_score=103.6 identity=40.0 coverage=95.48387096774194)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=1 to=153 evalue=1.5e-23 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
(db=HMMPfam db_id=PF00583 from=61 to=134 evalue=1.3e-13 interpro_id=IPR000182 interpro_description=GCN5-related N-acetyltransferase (GNAT) domain GO=Molecular Function: N-acetyltransferase activity (GO:0008080))
AMDSBA1_14_45
unknown

Not on your lists

comp(57059..57517)
DNA (459bp) protein (153aa)
seg (db=Seg db_id=seg from=12 to=29)
AMDSBA1_14_46
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

57947..58903
DNA (957bp) protein (319aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=30 to=50)
seg (db=Seg db_id=seg from=108 to=135)
seg (db=Seg db_id=seg from=213 to=231)
AMDSBA1_14_47
unknown

Not on your lists

58990..59529
DNA (540bp) protein (180aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA1_14_48
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

59532..60215
DNA (684bp) protein (228aa)
winged helix family two component transcriptional regulator
Two component transcriptional regulator n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KPB8_9BURK (db=UNIREF evalue=3.0e-29 bit_score=134.4 identity=40.2 coverage=80.26315789473685)
seg (db=Seg db_id=seg from=153 to=172)
TWO-COMPONENT SYSTEM SENSOR HISTIDINE KINASE/RESPONSE REGULATOR (INTESTINAL BACTERIA - BACTEROIDES THETAIOTAOMICRON) (db=HMMPanther db_id=PTHR23283:SF21 from=2 to=121 evalue=8.6e-24)
AMDSBA1_14_49
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

60208..61599
DNA (1392bp) protein (464aa)
histidine kinase
C4-dicarboxylate transport sensor protein DctB n=2 Tax=Ralstonia RepID=E2SU05_9RALS (db=UNIREF evalue=8.2e-10 bit_score=70.9 identity=26.1 coverage=75.86206896551724)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
coiled-coil (db=Coil db_id=coil from=220 to=241 evalue=NA)
AMDSBA1_14_50
unknown

Not on your lists

comp(61724..62023)
DNA (300bp) protein (100aa)
seg (db=Seg db_id=seg from=19 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA1_14_51
Brevibacillus borstelensis, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(63731..64459)
DNA (729bp) protein (243aa)
diguanylate cyclase/phosphodiesterase with CBS domains
EAL domain protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D5WGF7_BURSC (db=UNIREF evalue=1.4e-16 bit_score=92.4 identity=28.1 coverage=88.88888888888889)
EAL domain-like (db=superfamily db_id=SSF141868 from=4 to=228 evalue=2.0e-45 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
(db=HMMPfam db_id=PF00563 from=8 to=217 evalue=7.8e-40 interpro_id=IPR001633 interpro_description=Diguanylate phosphodiesterase, EAL domain)
AMDSBA1_14_52
Geobacillus caldoxylosilyticus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(64810..65127)
DNA (318bp) protein (106aa)
transposase
Transposase, IS605 OrfB family n=6 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TL70_9CHLR (db=UNIREF evalue=1.3e-08 bit_score=64.7 identity=56.0 coverage=46.22641509433962)
(db=HMMPfam db_id=PF07282 from=5 to=56 evalue=2.2e-12 interpro_id=IPR010095 interpro_description=Transposase IS605, OrfB, C-terminal)
Putative transposase {ECO:0000313|EMBL:GAJ41533.1}; TaxID=1220594 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus caldoxylosilyticus NBRC 107762.;"
Displaying items 31-51 of 51 in total

View Taxonomy