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AMDSBA1_14

Alias: AMDSBA1_C13

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Displaying items 1-30 of 51 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_14_1
Sulfobacillus thermotolerans, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..662)
DNA (660bp) protein (220aa)
Putative uncharacterized protein orfL60 n=1 Tax=Sulfobacillus thermotolerans RepID=G5CJ31_9FIRM (db=UNIREF evalue=6.9e-07 bit_score=60.1 identity=29.4 coverage=80.45454545454545)
seg (db=Seg db_id=seg from=9 to=22)
seg (db=Seg db_id=seg from=49 to=74)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=21 evalue=5.0)
AMDSBA1_14_2
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1244..1714
DNA (471bp) protein (157aa)
rbcL; ribulose bisophosphate carboxylase (EC:4.1.1.39)
Ribulose bisphosphate carboxylase large chain 2 n=9 Tax=Bacteria RepID=RBL1B_NITWN (db=UNIREF evalue=1.8e-65 bit_score=254.2 identity=75.3 coverage=97.45222929936305)
RUBISCO_LARGE (db=PatternScan db_id=PS00157 from=8 to=16 evalue=0.0 interpro_id=IPR020878 interpro_description=Ribulose bisphosphate carboxylase, large chain, active site GO=Molecular Function: magnesium ion binding (GO:0000287), Cellular Component: plastid (GO:0009536), Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984))
(db=HMMPfam db_id=PF00016 from=3 to=156 evalue=6.1e-79 interpro_id=IPR000685 interpro_description=Ribulose bisphosphate carboxylase, large subunit, C-terminal GO=Molecular Function: magnesium ion binding (GO:0000287), Cellular Component: plastid (GO:0009536), Biological Process: carbon fixation (GO:0015977), Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984))
AMDSBA1_14_3

Not on your lists

1721..2131
DNA (411bp) protein (137aa)
Ribulose-bisphosphate carboxylase (EC:4.1.1.39)
Ribulose bisphosphate carboxylase large chain 1 n=91 Tax=root RepID=RBL1A_ACIF2 (db=UNIREF evalue=1.2e-28 bit_score=131.7 identity=58.9 coverage=81.02189781021897)
(db=HMMPfam db_id=PF00016 from=3 to=112 evalue=2.8e-44 interpro_id=IPR000685 interpro_description=Ribulose bisphosphate carboxylase, large subunit, C-terminal GO=Molecular Function: magnesium ion binding (GO:0000287), Cellular Component: plastid (GO:0009536), Biological Process: carbon fixation (GO:0015977), Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984))
RuBisCo, C-terminal domain (db=superfamily db_id=SSF51649 from=1 to=127 evalue=7.0e-40 interpro_id=IPR000685 interpro_description=Ribulose bisphosphate carboxylase, large subunit, C-terminal GO=Molecular Function: magnesium ion binding (GO:0000287), Cellular Component: plastid (GO:0009536), Biological Process: carbon fixation (GO:0015977), Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984))
AMDSBA1_14_4
unknown

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2773..3273
DNA (501bp) protein (167aa)
seg (db=Seg db_id=seg from=125 to=140)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=51)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=86)
transmembrane_regions (db=TMHMM db_id=tmhmm from=117 to=139)
AMDSBA1_14_5
unknown

Not on your lists

3841..4092
DNA (252bp) protein (84aa)
3841..4092 + ( gc_cont=0.512)
AMDSBA1_14_6
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4257..5192)
DNA (936bp) protein (312aa)
zinc-binding dehydrogenase family oxidoreductase rbh
Alcohol dehydrogenase GroES domain protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U6J7_9CHLR (db=UNIREF evalue=2.2e-75 bit_score=288.1 identity=47.4 coverage=98.3974358974359)
GroES-like (db=superfamily db_id=SSF50129 from=5 to=148 evalue=1.6e-29 interpro_id=IPR011032 interpro_description=GroES-like)
ALCOHOL DEHYDROGENASE RELATED (db=HMMPanther db_id=PTHR11695 from=15 to=252 evalue=5.9e-27 interpro_id=IPR002085 interpro_description=Alcohol dehydrogenase superfamily, zinc-type GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_14_7
Thermoplasmatales archaeon E-plasma, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(5880..6815)
DNA (936bp) protein (312aa)
seg (db=Seg db_id=seg from=75 to=87)
RmlC-like cupins (db=superfamily db_id=SSF51182 from=145 to=285 evalue=7.4e-09 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
(db=HMMPfam db_id=PF07883 from=166 to=232 evalue=6.6e-08 interpro_id=IPR013096 interpro_description=Cupin 2, conserved barrel)
no description (db=Gene3D db_id=G3DSA:2.60.120.10 from=161 to=217 evalue=9.2e-05 interpro_id=IPR014710 interpro_description=RmlC-like jelly roll fold)
AMDSBA1_14_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7592..7876)
DNA (285bp) protein (95aa)
regulatory protein ArsR
Putative uncharacterized protein n=1 Tax=Singulisphaera acidiphila DSM 18658 RepID=H1MYF9_9PLAN (db=UNIREF evalue=4.0e-20 bit_score=102.8 identity=57.5 coverage=89.47368421052632)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=13 to=94 evalue=1.4e-12)
(db=HMMPfam db_id=PF01978 from=12 to=67 evalue=9.8e-09 interpro_id=IPR002831 interpro_description=Transcription regulator TrmB, N-terminal)
AMDSBA1_14_9
RBG_13_Actinobacteria_35_12_curated, Actinobacteria, Bacteria

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comp(8155..8550)
DNA (396bp) protein (132aa)
Putative uncharacterized protein n=1 Tax=Thermosediminibacter oceani DSM 16646 RepID=D9RXV7_THEOJ (db=UNIREF evalue=8.0e-11 bit_score=72.4 identity=34.0 coverage=68.18181818181817)
hypothetical protein
hypothetical protein Tax=RBG_13_Actinobacteria_35_12_curated
Uncharacterized protein n=1 Tax=Thermoanaerobacter siderophilus SR4 RepID=I9KRM3_9THEO
AMDSBA1_14_10
Leptospirillum ferriphilum, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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9187..10851
DNA (1665bp) protein (555aa)
NADH dehydrogenase rbh
NADH dehydrogenase n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NXP4_9RHOB (db=UNIREF evalue=4.8e-65 bit_score=254.6 identity=34.0 coverage=89.90990990990991)
transmembrane_regions (db=TMHMM db_id=tmhmm from=319 to=341)
transmembrane_regions (db=TMHMM db_id=tmhmm from=287 to=309)
AMDSBA1_14_11

Not on your lists

10848..13334
DNA (2487bp) protein (829aa)
hypothetical protein
UPF0753 protein RB1129 n=2 Tax=Rhodopirellula baltica RepID=Y1129_RHOBA (db=UNIREF evalue=4.5e-144 bit_score=517.7 identity=37.3 coverage=98.67310012062727)
seg (db=Seg db_id=seg from=402 to=412)
AMDSBA1_14_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13736..14638)
DNA (903bp) protein (301aa)
LysR family transcriptional regulator
Transcriptional regulator, LysR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNI4_9FIRM (db=UNIREF evalue=9.7e-20 bit_score=103.2 identity=29.6 coverage=96.3455149501661)
seg (db=Seg db_id=seg from=99 to=110)
seg (db=Seg db_id=seg from=81 to=92)
AMDSBA1_14_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14751..15818
DNA (1068bp) protein (356aa)
permease
Membrane protein, putative n=2 Tax=Clostridium RepID=C6PWT9_9CLOT (db=UNIREF evalue=4.0e-73 bit_score=280.8 identity=41.2 coverage=96.34831460674157)
transmembrane_regions (db=TMHMM db_id=tmhmm from=178 to=197)
transmembrane_regions (db=TMHMM db_id=tmhmm from=235 to=257)
AMDSBA1_14_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16232..17827
DNA (1596bp) protein (532aa)
hypothetical protein
hypothetical protein
Putative uncharacterized protein chvB n=2 Tax=Sulfobacillus acidophilus RepID=F8I7C8_SULAT (db=UNIREF evalue=3.8e-184 bit_score=650.2 identity=62.6 coverage=93.98496240601504)
AMDSBA1_14_15
Paenibacillus sp. MSt1, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18280..18840)
DNA (561bp) protein (187aa)
hypothetical protein
UPF0059 membrane protein Flexsi_1459 n=1 Tax=Flexistipes sinusarabici DSM 4947 RepID=F8E8B2_FLESM (db=UNIREF evalue=9.0e-08 bit_score=62.8 identity=24.3 coverage=91.97860962566845)
transmembrane_regions (db=TMHMM db_id=tmhmm from=163 to=185)
transmembrane_regions (db=TMHMM db_id=tmhmm from=126 to=148)
AMDSBA1_14_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19784..20818
DNA (1035bp) protein (345aa)
LacI family transcriptional regulator
LacI-type transcriptional regulator n=23 Tax=Bifidobacterium RepID=D4BLP5_BIFBR (db=UNIREF evalue=4.5e-21 bit_score=107.8 identity=27.1 coverage=95.65217391304348)
seg (db=Seg db_id=seg from=13 to=22)
coiled-coil (db=Coil db_id=coil from=33 to=54 evalue=NA)
AMDSBA1_14_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20796..23138
DNA (2343bp) protein (781aa)
beta-galactosidase (EC:3.2.1.23)
Glycoside hydrolase family 35 n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C215_BEUC1 (db=UNIREF evalue=2.6e-32 bit_score=146.4 identity=28.0 coverage=74.51984635083227)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=2 to=402 evalue=3.5e-53 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, superfamily)
no description (db=Gene3D db_id=G3DSA:3.20.20.80 from=2 to=404 evalue=4.1e-51 interpro_id=IPR013781 interpro_description=Glycoside hydrolase, subgroup, catalytic domain GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: carbohydrate metabolic process (GO:0005975), Molecular Function: cation binding (GO:0043169))
AMDSBA1_14_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23208..24854
DNA (1647bp) protein (549aa)
ABC transporter periplasmic protein
Extracellular solute-binding protein family 5 n=1 Tax=Thermotoga thermarum DSM 5069 RepID=F7YUR1_9THEM (db=UNIREF evalue=1.6e-12 bit_score=80.1 identity=23.6 coverage=55.55555555555556)
seg (db=Seg db_id=seg from=522 to=536)
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=33 to=534 evalue=4.1e-97)
AMDSBA1_14_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24913..25899
DNA (987bp) protein (329aa)
ABC transporter
ABC-type transporter, integral membrane subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TSA4_9FIRM (db=UNIREF evalue=5.1e-155 bit_score=552.7 identity=80.1 coverage=98.78419452887537)
transmembrane_regions (db=TMHMM db_id=tmhmm from=188 to=210)
transmembrane_regions (db=TMHMM db_id=tmhmm from=144 to=166)
AMDSBA1_14_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25896..26837
DNA (942bp) protein (314aa)
binding-protein-dependent transport system inner membrane protein
Oligopeptide ABC transporter, permease protein n=62 Tax=Vibrio RepID=A1EJ46_VIBCL (db=UNIREF evalue=7.2e-34 bit_score=150.2 identity=31.1 coverage=87.57961783439491)
transmembrane_regions (db=TMHMM db_id=tmhmm from=131 to=153)
transmembrane_regions (db=TMHMM db_id=tmhmm from=158 to=177)
AMDSBA1_14_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26834..27847
DNA (1014bp) protein (338aa)
oligopeptide/dipeptide ABC transporter ATPase (EC:3.6.3.24)
Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0NFR5_EUBSP (db=UNIREF evalue=3.1e-51 bit_score=208.0 identity=35.2 coverage=93.49112426035504)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=5 to=318 evalue=2.1e-117)
seg (db=Seg db_id=seg from=321 to=329)
AMDSBA1_14_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27837..28802
DNA (966bp) protein (322aa)
oligopeptide/dipeptide ABC transporter ATPase (EC:3.6.3.24) rbh
ABC-type oligopeptide transport system ATPase component n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P4G1_VIBME (db=UNIREF evalue=1.1e-64 bit_score=252.7 identity=46.2 coverage=91.61490683229813)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=7 to=321 evalue=1.8e-125)
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=153 to=167 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
AMDSBA1_14_23
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(28861..29829)
DNA (969bp) protein (323aa)
Putative uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CAN6_9PLAN (db=UNIREF evalue=4.9e-70 bit_score=270.4 identity=46.0 coverage=95.04643962848297)
hypothetical protein
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=25 to=313 evalue=3.6e-32)
no description (db=Gene3D db_id=G3DSA:3.40.50.1820 from=14 to=280 evalue=7.0e-08)
AMDSBA1_14_24
unknown

Not on your lists

comp(29993..30391)
DNA (399bp) protein (133aa)
29993..30391 - ( gc_cont=0.561)
AMDSBA1_14_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30663..32642)
DNA (1980bp) protein (660aa)
NAD-dependent formate dehydrogenase catalytic subunit (EC:1.7.99.4)
NAD-dependent formate dehydrogenase catalytic subunit n=1 Tax=Sulfobacillus acidophilus DSM 10332 RepID=G8TT95_9FIRM (db=UNIREF evalue=3.2e-24 bit_score=116.3 identity=75.3 coverage=87.35632183908046)
Formate dehydrogenase/DMSO reductase, domains 1-3 (db=superfamily db_id=SSF53706 from=8 to=85 evalue=3.3e-19)
no description (db=Gene3D db_id=G3DSA:3.40.50.740 from=11 to=86 evalue=7.5e-17)
AMDSBA1_14_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32875..33996)
DNA (1122bp) protein (374aa)
32875..33996 - ( gc_cont=0.504)
putative PucR family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:AEW04441.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I670_SULAT
AMDSBA1_14_28
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(34291..35085)
DNA (795bp) protein (265aa)
aqpM; Aquaporin
Putative Major intrinsic protein n=1 Tax=uncultured marine crenarchaeote HF4000_ANIW133I6 RepID=B3T414_9ARCH (db=UNIREF evalue=2.2e-23 bit_score=115.2 identity=33.8 coverage=90.18867924528303)
transmembrane_regions (db=TMHMM db_id=tmhmm from=145 to=167)
transmembrane_regions (db=TMHMM db_id=tmhmm from=224 to=246)
AMDSBA1_14_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35323..36456)
DNA (1134bp) protein (378aa)
fdhA; hypothetical protein
Zinc-binding dehydrogenase n=1 Tax=Haloarcula marismortui ATCC 43049 RepID=Q5V607_HALMA (db=UNIREF evalue=3.5e-27 bit_score=128.3 identity=34.7 coverage=65.87301587301587)
ADH_ZINC (db=PatternScan db_id=PS00059 from=58 to=72 evalue=0.0 interpro_id=IPR002328 interpro_description=Alcohol dehydrogenase, zinc-type, conserved site GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED (db=HMMPanther db_id=PTHR11695:SF38 from=11 to=375 evalue=2.4e-98)
AMDSBA1_14_30

Not on your lists

37175..38125
DNA (951bp) protein (317aa)
respiratory-chain NADH dehydrogenase subunit 1
Respiratory-chain NADH dehydrogenase subunit 1 n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1P3_HALNC (db=UNIREF evalue=1.4e-64 bit_score=252.3 identity=40.6 coverage=98.10725552050474)
seg (db=Seg db_id=seg from=77 to=88)
transmembrane_regions (db=TMHMM db_id=tmhmm from=289 to=311)
AMDSBA1_14_31
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38159..38869
DNA (711bp) protein (237aa)
hypothetical protein
Hydrogenase subunit n=1 Tax=Methylococcus capsulatus str. Bath RepID=Q609T7_METCA (db=UNIREF evalue=3.7e-14 bit_score=84.3 identity=25.2 coverage=87.76371308016878)
seg (db=Seg db_id=seg from=224 to=236)
transmembrane_regions (db=TMHMM db_id=tmhmm from=182 to=204)
Displaying items 1-30 of 51 in total

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