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AMDSBA1_29

Alias: AMDSBA1_C28

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Displaying items 1-30 of 34 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_29_1
unknown

Not on your lists

comp(48..305)
DNA (258bp) protein (86aa)
no description (db=Gene3D db_id=G3DSA:3.40.50.1100 from=1 to=73 evalue=0.00092)
AMDSBA1_29_2
Desulfotomaculum kuznetsovii, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(289..669)
DNA (381bp) protein (127aa)
threonine dehydratase
Tryptophan synthase beta subunit-like PLP-dependent enzymes (db=superfamily db_id=SSF53686 from=7 to=126 evalue=4.2e-24 interpro_id=IPR001926 interpro_description=Pyridoxal phosphate-dependent enzyme, beta subunit GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152), Molecular Function: pyridoxal phosphate binding (GO:0030170))
SER/THR DEHYDRATASE, TRP SYNTHASE (db=HMMPanther db_id=PTHR10314 from=31 to=123 evalue=1.0e-22)
THREONINE DEHYDRATASE-RELATED (db=HMMPanther db_id=PTHR10314:SF17 from=31 to=123 evalue=1.0e-22)
AMDSBA1_29_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1056..2774)
DNA (1719bp) protein (573aa)
family 5 extracellular solute-binding protein
ABC-type transporter, periplasmic subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TX08_9FIRM (db=UNIREF evalue=6.3e-185 bit_score=652.9 identity=54.6 coverage=98.42931937172776)
seg (db=Seg db_id=seg from=138 to=154)
seg (db=Seg db_id=seg from=28 to=41)
AMDSBA1_29_4
unknown

Not on your lists

3382..3618
DNA (237bp) protein (79aa)
3382..3618 + ( gc_cont=0.515)
AMDSBA1_29_5
Catenulispora acidiphila, Catenulispora, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(3687..4889)
DNA (1203bp) protein (401aa)
major facilitator superfamily protein (db=KEGG evalue=5.3e-13 bit_score=80.9 identity=23.5 coverage=96.50872817955111)
Major facilitator superfamily MFS_1 n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QKC3_CATAD (db=UNIREF evalue=6.9e-13 bit_score=80.9 identity=23.5 coverage=96.50872817955111)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=298 to=314)
AMDSBA1_29_6
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

5828..7564
DNA (1737bp) protein (579aa)
ABC transporter-like protein
Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B5Y4J0_PHATC (db=UNIREF evalue=1.2e-50 bit_score=206.8 identity=35.4 coverage=54.57685664939551)
transmembrane_regions (db=TMHMM db_id=tmhmm from=155 to=174)
seg (db=Seg db_id=seg from=232 to=249)
AMDSBA1_29_7
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7561..9423
DNA (1863bp) protein (621aa)
ABC transporter
ABC transporter
ABC transporter, ATP-binding protein n=2 Tax=Bacteria RepID=D6KVX2_SCAIO (db=UNIREF evalue=2.3e-07 bit_score=63.2 identity=23.9 coverage=33.65539452495974)
transmembrane_regions (db=TMHMM db_id=tmhmm from=287 to=309)
AMDSBA1_29_8
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(9516..11471)
DNA (1956bp) protein (652aa)
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase
Acetyl-coenzyme A synthetase n=1 Tax=Picrophilus torridus DSM 9790 RepID=Q6L1R5_PICTO (db=UNIREF evalue=2.2e-117 bit_score=428.7 identity=54.8 coverage=58.12883435582822)
seg (db=Seg db_id=seg from=52 to=63)
AMDSBA1_29_9
unknown

Not on your lists

comp(12014..12280)
DNA (267bp) protein (89aa)
12014..12280 - ( gc_cont=0.476)
AMDSBA1_29_10
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13075..14235)
DNA (1161bp) protein (387aa)
L-carnitine dehydratase/bile acid-inducible protein F
YALI0D25542p n=1 Tax=Yarrowia lipolytica CLIB122 RepID=Q6C7T4_YARLI (db=UNIREF evalue=2.4e-63 bit_score=248.4 identity=40.1 coverage=85.78811369509044)
CoA-transferase family III (CaiB/BaiF) (db=superfamily db_id=SSF89796 from=1 to=386 evalue=9.2e-140 interpro_id=IPR023606 interpro_description=CoA-transferase family III domain)
ALPHA METHYLACYL-COA RACEMASE (db=HMMPanther db_id=PTHR11837 from=16 to=386 evalue=5.7e-117 interpro_id=IPR003673 interpro_description=CoA-transferase family III GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
AMDSBA1_29_11
RIFOXYA1_FULL_Alicyclobacillus_53_8_curated, Firmicutes, Bacteria

Not on your lists

comp(14279..15055)
DNA (777bp) protein (259aa)
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YYF1_LISDA (db=UNIREF evalue=6.4e-12 bit_score=77.0 identity=25.9 coverage=91.11969111969111)
seg (db=Seg db_id=seg from=105 to=121)
ENOYL_COA_HYDRATASE (db=PatternScan db_id=PS00166 from=104 to=124 evalue=0.0 interpro_id=IPR018376 interpro_description=Enoyl-CoA hydratase/isomerase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
AMDSBA1_29_12
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

15802..16338
DNA (537bp) protein (179aa)
Acetyltransferase n=6 Tax=Lactobacillus plantarum RepID=D7VDT1_LACPN (db=UNIREF evalue=3.9e-08 bit_score=63.9 identity=30.0 coverage=72.06703910614524)
seg (db=Seg db_id=seg from=167 to=178)
coiled-coil (db=Coil db_id=coil from=41 to=62 evalue=NA)
Acyl-CoA N-acyltransferases (Nat) (db=superfamily db_id=SSF55729 from=2 to=173 evalue=7.9e-29 interpro_id=IPR016181 interpro_description=Acyl-CoA N-acyltransferase)
AMDSBA1_29_13
unknown

Not on your lists

comp(16286..16528)
DNA (243bp) protein (81aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=32)
AMDSBA1_29_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(16782..17588)
DNA (807bp) protein (269aa)
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2S016_HALTV (db=UNIREF evalue=1.5e-27 bit_score=129.0 identity=33.6 coverage=91.07806691449815)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=57 to=76)
AMDSBA1_29_15
Jeotgalibacillus soli Cunha et al. 2012, Jeotgalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17805..18494
DNA (690bp) protein (230aa)
transcriptional regulator
(db=HMMPfam db_id=PF07729 from=83 to=205 evalue=5.0e-18 interpro_id=IPR011711 interpro_description=GntR, C-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=8 to=80 evalue=1.0e-17)
(db=HMMPfam db_id=PF00392 from=12 to=73 evalue=3.2e-17 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA1_29_16
unknown

Not on your lists

comp(18933..19124)
DNA (192bp) protein (64aa)
seg (db=Seg db_id=seg from=7 to=19)
AMDSBA1_29_17
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19461..20591
DNA (1131bp) protein (377aa)
seg (db=Seg db_id=seg from=49 to=62)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=120 to=322 evalue=9.4e-43)
BETA LACTAMASE DOMAIN (db=HMMPanther db_id=PTHR11935 from=206 to=376 evalue=1.6e-36)
BETA LACTAMASE DOMAIN (db=HMMPanther db_id=PTHR11935:SF6 from=206 to=376 evalue=1.6e-36)
AMDSBA1_29_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20781..21935)
DNA (1155bp) protein (385aa)
Ubiquinone/menaquinone biosynthesis methyltransferase n=2 Tax=Sulfobacillus acidophilus RepID=F8I394_SULAT (db=UNIREF evalue=5.5e-84 bit_score=317.0 identity=43.5 coverage=96.1038961038961)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=1 to=227 evalue=2.0e-38)
METHYLTRANSFERASE (db=HMMPanther db_id=PTHR10108 from=19 to=236 evalue=1.3e-37)
AMDSBA1_29_19
unknown

Not on your lists

22320..22808
DNA (489bp) protein (163aa)
22320..22808 + ( gc_cont=0.532)
AMDSBA1_29_20
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22780..23553)
DNA (774bp) protein (258aa)
Enoyl-[acyl-carrier-protein] reductase [NADPH] FabL
3-oxoacyl-(Acyl-carrier-protein) reductase n=2 Tax=Pyrenophora RepID=B2WK94_PYRTR (db=UNIREF evalue=8.3e-20 bit_score=103.2 identity=30.0 coverage=96.89922480620154)
seg (db=Seg db_id=seg from=39 to=54)
3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE-RELATED (db=HMMPanther db_id=PTHR19410:SF95 from=3 to=247 evalue=4.3e-84)
AMDSBA1_29_21
RBG_13_Chloroflexi_54_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(23664..24446)
DNA (783bp) protein (261aa)
short chain enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TZK2_9RHOB (db=UNIREF evalue=1.5e-13 bit_score=82.4 identity=27.2 coverage=80.07662835249042)
ENOYL_COA_HYDRATASE (db=PatternScan db_id=PS00166 from=101 to=121 evalue=0.0 interpro_id=IPR018376 interpro_description=Enoyl-CoA hydratase/isomerase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ClpP/crotonase (db=superfamily db_id=SSF52096 from=4 to=260 evalue=2.7e-82)
AMDSBA1_29_22
Bacillus simplex, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25094..25891)
DNA (798bp) protein (266aa)
naphthoate synthase rbh
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial n=2 Tax=Bos taurus RepID=HIBCH_BOVIN (db=UNIREF evalue=8.9e-09 bit_score=66.6 identity=27.8 coverage=57.89473684210527)
seg (db=Seg db_id=seg from=73 to=87)
ENOYL_COA_HYDRATASE (db=PatternScan db_id=PS00166 from=105 to=125 evalue=0.0 interpro_id=IPR018376 interpro_description=Enoyl-CoA hydratase/isomerase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
AMDSBA1_29_23
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(26497..30009)
DNA (3513bp) protein (1171aa)
SMC domain-containing protein
SMC domain-containing protein
coiled-coil (db=Coil db_id=coil from=220 to=241 evalue=NA)
seg (db=Seg db_id=seg from=158 to=171)
AMDSBA1_29_24
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30012..31268)
DNA (1257bp) protein (419aa)
DNA repair exonuclease family protein
Ser/Thr protein phosphatase family protein n=4 Tax=Staphylococcus RepID=B9CT39_STACP (db=UNIREF evalue=5.8e-39 bit_score=167.5 identity=33.9 coverage=63.48448687350835)
seg (db=Seg db_id=seg from=358 to=370)
coiled-coil (db=Coil db_id=coil from=349 to=370 evalue=NA)
AMDSBA1_29_25

Not on your lists

31840..32574
DNA (735bp) protein (245aa)
Putative uncharacterized protein n=1 Tax=mine drainage metagenome RepID=E6PCE4_9ZZZZ (db=UNIREF evalue=5.6e-26 bit_score=123.6 identity=37.7 coverage=89.38775510204081)
seg (db=Seg db_id=seg from=82 to=92)
seg (db=Seg db_id=seg from=108 to=116)
alpha/beta-Hydrolases (db=superfamily db_id=SSF53474 from=12 to=233 evalue=6.0e-26)
AMDSBA1_29_26
Tumebacillus flagellatus, Tumebacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

32965..33348
DNA (384bp) protein (128aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CJG4_9BACI (db=UNIREF evalue=1.9e-33 bit_score=147.5 identity=52.0 coverage=98.4375)
Uncharacterised conserved protein, UCP021774 type (db=HMMPIR db_id=PIRSF021774 from=1 to=127 evalue=3.3e-44 interpro_id=IPR016796 interpro_description=Uncharacterised conserved protein UCP021774)
TT1751-like (db=superfamily db_id=SSF103247 from=3 to=126 evalue=1.4e-36 interpro_id=IPR005180 interpro_description=Domain of unknown function DUF302)
AMDSBA1_29_27
unknown

Not on your lists

comp(33385..33603)
DNA (219bp) protein (73aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=9 to=24)
(db=HMMPfam db_id=PF09851 from=6 to=65 evalue=4.3e-13 interpro_id=IPR018649 interpro_description=Protein of unknown function DUF2078, membrane)
AMDSBA1_29_28
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

34262..35716
DNA (1455bp) protein (485aa)
EmrB/QacA subfamily drug resistance transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=172 to=191)
transmembrane_regions (db=TMHMM db_id=tmhmm from=300 to=322)
transmembrane_regions (db=TMHMM db_id=tmhmm from=145 to=167)
AMDSBA1_29_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35936..37435)
DNA (1500bp) protein (500aa)
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Terriglobus roseus DSM 18391 RepID=I3ZKH7_9BACT (db=UNIREF evalue=3.8e-13 bit_score=82.0 identity=32.2 coverage=33.2)
seg (db=Seg db_id=seg from=112 to=127)
transmembrane_regions (db=TMHMM db_id=tmhmm from=89 to=106)
AMDSBA1_29_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38521..38979
DNA (459bp) protein (153aa)
regulatory protein MarR
Regulatory protein MarR n=2 Tax=Sulfobacillus acidophilus RepID=G8U057_9FIRM (db=UNIREF evalue=4.9e-28 bit_score=129.8 identity=47.4 coverage=86.9281045751634)
seg (db=Seg db_id=seg from=81 to=93)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=5 to=141 evalue=5.1e-23)
Displaying items 1-30 of 34 in total

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