ggKbase home page

AMDSBA1_33

Alias: AMDSBA1_C32

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA1_33_1
unknown

Not on your lists

comp(3..77)
-----------------
DNA (75bp)
protein (25aa)
3..77 - ( gc_cont=0.520)
AMDSBA1_33_2
unknown

Not on your lists

comp(162..308)
-----------------
DNA (147bp)
protein (49aa)
162..308 - ( gc_cont=0.531)
AMDSBA1_33_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(247..1203)
-----------------
DNA (957bp)
protein (319aa)
Radical SAM domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ69_9FIRM (db=UNIREF evalue=5.3e-117 bit_score=426.4 identity=66.1 coverage=98.7460815047022)
radical SAM protein rbh
radical SAM protein rbh
AMDSBA1_33_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1184..2395)
-----------------
DNA (1212bp)
protein (404aa)
radical SAM protein
radical SAM protein
Radical SAM domain protein n=1 Tax=Kyrpidia tusciae DSM 2912 RepID=D5WTA3_BACT2 (db=UNIREF evalue=5.4e-159 bit_score=566.2 identity=75.2 coverage=89.10891089108911)
AMDSBA1_33_5
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2392..3480)
-----------------
DNA (1089bp)
protein (363aa)
biotin/lipoate A/B protein ligase
biotin/lipoate A/B protein ligase
Biotin/lipoate A/B protein ligase n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ67_9FIRM (db=UNIREF evalue=5.3e-113 bit_score=413.3 identity=55.8 coverage=96.14325068870524)
AMDSBA1_33_6
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3480..3896)
-----------------
DNA (417bp)
protein (139aa)
glycine cleavage system H protein
Glycine cleavage system H protein n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N2N4_9GAMM (db=UNIREF evalue=5.8e-20 bit_score=102.8 identity=40.2 coverage=86.33093525179856)
LIPOYL (db=PatternScan db_id=PS00189 from=55 to=84 evalue=0.0 interpro_id=IPR003016 interpro_description=2-oxo acid dehydrogenase, lipoyl-binding site)
GLYCINE CLEAVAGE SYSTEM H PROTEIN (db=HMMPanther db_id=PTHR11715 from=6 to=138 evalue=9.4e-45 interpro_id=IPR002930 interpro_description=Glycine cleavage H-protein GO=Cellular Component: glycine cleavage complex (GO:0005960), Biological Process: glycine catabolic process (GO:0006546))
AMDSBA1_33_7
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3983..4966)
-----------------
DNA (984bp)
protein (328aa)
biotin/lipoate A/B protein ligase
Biotin/lipoate A/B protein ligase n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ65_9FIRM (db=UNIREF evalue=6.3e-73 bit_score=280.0 identity=45.9 coverage=99.08536585365853)
Class II aaRS and biotin synthetases (db=superfamily db_id=SSF55681 from=8 to=241 evalue=1.0e-23)
no description (db=Gene3D db_id=G3DSA:3.90.1550.10 from=17 to=241 evalue=3.7e-21)
AMDSBA1_33_8
CG_Syntroph_02, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5685..6455
-----------------
DNA (771bp)
protein (257aa)
family 2 glycosyl transferase
Uncharacterized protein (Fragment) n=1 Tax=Caenorhabditis japonica RepID=H2XGB4_CAEJA (db=UNIREF evalue=2.0e-13 bit_score=82.0 identity=26.1 coverage=84.43579766536965)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=237 evalue=5.3e-50)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=1 to=244 evalue=8.2e-32)
AMDSBA1_33_9
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

6409..7107
-----------------
DNA (699bp)
protein (233aa)
glycosyl transferase family protein
Glycosyltransferase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2W4_9CLOT (db=UNIREF evalue=1.6e-38 bit_score=165.2 identity=38.0 coverage=97.85407725321889)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=159 evalue=7.2e-16)
(db=HMMPfam db_id=PF00535 from=12 to=141 evalue=3.9e-08 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
AMDSBA1_33_10
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

7197..8531
-----------------
DNA (1335bp)
protein (445aa)
family 2 glycosyl transferase
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=231 evalue=2.6e-42)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=4 to=232 evalue=3.6e-24)
(db=HMMPfam db_id=PF00535 from=7 to=145 evalue=5.8e-19 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
AMDSBA1_33_11
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

8562..9431
-----------------
DNA (870bp)
protein (290aa)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=166 to=264 evalue=2.6e-08)
Uncharacterized protein n=1 Tax=Bacillus methanolicus PB1 RepID=I3E216_BACMT
hypothetical protein
AMDSBA1_33_12
Alicyclobacillus hesperidum, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9809..11260
-----------------
DNA (1452bp)
protein (484aa)
family 2 glycosyl transferase
Glycosyl transferase family 2 n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 RepID=F8IKD4_ALIAT (db=UNIREF evalue=3.9e-71 bit_score=274.6 identity=34.2 coverage=97.31404958677686)
coiled-coil (db=Coil db_id=coil from=463 to=484 evalue=NA)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=102 to=280 evalue=3.6e-27)
AMDSBA1_33_13
unknown

Not on your lists

comp(11961..12710)
-----------------
DNA (750bp)
protein (250aa)
seg (db=Seg db_id=seg from=235 to=246)
AMDSBA1_33_14
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13260..13868
-----------------
DNA (609bp)
protein (203aa)
seg (db=Seg db_id=seg from=51 to=65)
seg (db=Seg db_id=seg from=174 to=198)
Uncharacterized protein n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q0H8_9FIRM
AMDSBA1_33_15
Bacillus selenatarsenatis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14473..14706
-----------------
DNA (234bp)
protein (78aa)
Gas vesicle structural protein 2 n=1 Tax=Clostridium sp. DL-VIII RepID=G7LZZ7_9CLOT (db=UNIREF evalue=2.4e-18 bit_score=96.7 identity=64.9 coverage=92.3076923076923)
gas vesicle synthesis protein GvpA
GAS_VESICLE_A_2 (db=PatternScan db_id=PS00669 from=46 to=59 evalue=0.0 interpro_id=IPR018493 interpro_description=Gas vesicle protein GvpA, conserved site GO=Molecular Function: structural molecule activity (GO:0005198), Cellular Component: vesicle membrane (GO:0012506))
GAS_VESICLE_A_1 (db=PatternScan db_id=PS00234 from=13 to=27 evalue=0.0 interpro_id=IPR018493 interpro_description=Gas vesicle protein GvpA, conserved site GO=Molecular Function: structural molecule activity (GO:0005198), Cellular Component: vesicle membrane (GO:0012506))
AMDSBA1_33_16
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14778..15674
-----------------
DNA (897bp)
protein (299aa)
MoxR-like ATPase
Gas vesicle protein GvpN n=1 Tax=Desulfosporosinus sp. OT RepID=G2G153_9FIRM (db=UNIREF evalue=4.4e-41 bit_score=174.1 identity=35.8 coverage=85.95317725752508)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=14 to=224 evalue=3.0e-28)
(db=HMMPfam db_id=PF07728 from=39 to=170 evalue=2.1e-15 interpro_id=IPR011704 interpro_description=ATPase, dynein-related, AAA domain GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
AMDSBA1_33_17
RLO_Omnitrophica_50_11, Omnitrophica, Bacteria

Not on your lists

15743..16474
-----------------
DNA (732bp)
protein (244aa)
gas vesicle synthesis GvpLGvpF
Gas vesicle synthesis protein n=1 Tax=Streptomyces venezuelae ATCC 10712 RepID=F2R6Y2_STRVP (db=UNIREF evalue=3.1e-16 bit_score=91.3 identity=25.6 coverage=95.49180327868852)
(db=HMMPfam db_id=PF06386 from=2 to=239 evalue=4.3e-46 interpro_id=IPR009430 interpro_description=Gas vesicle protein GvpL/GvpF GO=Cellular Component: gas vesicle (GO:0031411), Biological Process: gas vesicle organization (GO:0031412))
Gas vesicle synthesis protein GvpL/GvpF n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LEM4_THEPS
AMDSBA1_33_18
unknown

Not on your lists

16479..16757
-----------------
DNA (279bp)
protein (93aa)
(db=HMMPfam db_id=PF05120 from=13 to=81 evalue=9.5e-09 interpro_id=IPR007804 interpro_description=Gas vesicle protein GvpG)
AMDSBA1_33_19
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

Not on your lists

16757..17014
-----------------
DNA (258bp)
protein (86aa)
(db=HMMPfam db_id=PF05800 from=3 to=81 evalue=5.9e-21 interpro_id=IPR008634 interpro_description=Gas vesicle protein GvpO GO=Biological Process: gas vesicle organization (GO:0031412))
Gas vesicle synthesis protein n=1 Tax=Streptomyces ipomoeae 91-03 RepID=L1L3V9_9ACTO
AMDSBA1_33_20
Oscillochloris trichoides, Oscillochloris, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

17133..17834
-----------------
DNA (702bp)
protein (234aa)
gas vesicle synthesis protein GvpLGvpF
(db=HMMPfam db_id=PF06386 from=7 to=228 evalue=3.8e-31 interpro_id=IPR009430 interpro_description=Gas vesicle protein GvpL/GvpF GO=Cellular Component: gas vesicle (GO:0031411), Biological Process: gas vesicle organization (GO:0031412))
Gas vesicle synthesis GvpLGvpF n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IGU3_9CHLR
AMDSBA1_33_21
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

17831..18181
-----------------
DNA (351bp)
protein (117aa)
hypothetical protein
Hypothetical membrane protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D579_PELTS (db=UNIREF evalue=3.0e-17 bit_score=93.6 identity=45.5 coverage=94.01709401709401)
seg (db=Seg db_id=seg from=47 to=65)
(db=HMMPfam db_id=PF05121 from=32 to=115 evalue=1.1e-27 interpro_id=IPR007805 interpro_description=Gas vesicle protein GvpK GO=Biological Process: gas vesicle organization (GO:0031412))
AMDSBA1_33_22
Cylindrospermopsis raciborskii, Cylindrospermopsis, Nostocales, Cyanobacteria, Bacteria

Not on your lists

18213..18569
-----------------
DNA (357bp)
protein (119aa)
gvpJ; gas vesicle protein
Gas vesicle protein gvpJ n=4 Tax=Bacillus megaterium RepID=GVPJ_BACME (db=UNIREF evalue=1.6e-21 bit_score=107.8 identity=58.3 coverage=76.47058823529412)
coiled-coil (db=Coil db_id=coil from=67 to=95 evalue=NA)
GAS_VESICLE_A_2 (db=PatternScan db_id=PS00669 from=40 to=53 evalue=0.0 interpro_id=IPR018493 interpro_description=Gas vesicle protein GvpA, conserved site GO=Molecular Function: structural molecule activity (GO:0005198), Cellular Component: vesicle membrane (GO:0012506))
AMDSBA1_33_23
Rhodococcus ruber, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18566..19345
-----------------
DNA (780bp)
protein (260aa)
coiled-coil (db=Coil db_id=coil from=170 to=191 evalue=NA)
coiled-coil (db=Coil db_id=coil from=102 to=123 evalue=NA)
(db=HMMPfam db_id=PF06386 from=5 to=258 evalue=8.3e-39 interpro_id=IPR009430 interpro_description=Gas vesicle protein GvpL/GvpF GO=Cellular Component: gas vesicle (GO:0031411), Biological Process: gas vesicle organization (GO:0031412))
Gas vesicle synthesis protein n=1 Tax=Rhodococcus ruber BKS 20-38 RepID=M2ZGW1_9NOCA
AMDSBA1_33_24
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

19418..19633
-----------------
DNA (216bp)
protein (72aa)
(db=HMMPfam db_id=PF00741 from=11 to=49 evalue=3.8e-15 interpro_id=IPR000638 interpro_description=Gas vesicle protein GvpA GO=Molecular Function: structural molecule activity (GO:0005198), Cellular Component: vesicle membrane (GO:0012506))
hypothetical protein
Hypothetical membrane protein n=1 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D581_PELTS
AMDSBA1_33_25
Alicyclobacillus acidoterrestris, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(20097..20651)
-----------------
DNA (555bp)
protein (185aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=B7DM16_9BACL (db=UNIREF evalue=1.2e-12 bit_score=79.0 identity=40.2 coverage=62.70270270270271)
seg (db=Seg db_id=seg from=38 to=47)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=33 evalue=6.0)
AMDSBA1_33_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21565..22662
-----------------
DNA (1098bp)
protein (366aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TSY1_9FIRM (db=UNIREF evalue=8.9e-52 bit_score=209.9 identity=37.9 coverage=94.53551912568307)
seg (db=Seg db_id=seg from=126 to=141)
(Trans)glycosidases (db=superfamily db_id=SSF51445 from=158 to=365 evalue=3.0e-24 interpro_id=IPR017853 interpro_description=Glycoside hydrolase, superfamily)
AMDSBA1_33_27
unknown

Not on your lists

22845..23075
-----------------
DNA (231bp)
protein (77aa)
22845..23075 + ( gc_cont=0.567)
AMDSBA1_33_28
unknown

Not on your lists

23095..23394
-----------------
DNA (300bp)
protein (100aa)
23095..23394 + ( gc_cont=0.487)
AMDSBA1_33_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23278..23667)
-----------------
DNA (390bp)
protein (130aa)
panD; aspartate 1-decarboxylase
Aspartate 1-decarboxylase 2 n=2 Tax=Sulfobacillus acidophilus RepID=G8U0R1_9FIRM (db=UNIREF evalue=4.6e-43 bit_score=179.5 identity=67.4 coverage=98.46153846153847)
Aspartate 1-decarboxylase (db=HMMPIR db_id=PIRSF006246 from=1 to=124 evalue=4.1e-58 interpro_id=IPR003190 interpro_description=Aspartate decarboxylase GO=Molecular Function: aspartate 1-decarboxylase activity (GO:0004068), Biological Process: alanine biosynthetic process (GO:0006523))
ASPARTATE 1-DECARBOXYLASE (db=HMMPanther db_id=PTHR21012 from=2 to=123 evalue=8.1e-48 interpro_id=IPR003190 interpro_description=Aspartate decarboxylase GO=Molecular Function: aspartate 1-decarboxylase activity (GO:0004068), Biological Process: alanine biosynthetic process (GO:0006523))
AMDSBA1_33_30
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(23726..24628)
-----------------
DNA (903bp)
protein (301aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
D-lactate dehydrogenase n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8FW99_9CYAN (db=UNIREF evalue=7.2e-23 bit_score=113.6 identity=34.5 coverage=72.09302325581395)
seg (db=Seg db_id=seg from=62 to=73)
D_2_HYDROXYACID_DH_2 (db=PatternScan db_id=PS00670 from=184 to=206 evalue=0.0 interpro_id=IPR006140 interpro_description=D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding GO=Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: cofactor binding (GO:0048037), Biological Process: oxidation-reduction process (GO:0055114))
Displaying items 1-30 of 45 in total

View Taxonomy