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AMDSBA1_35

Alias: AMDSBA1_C34

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_35_1
unknown

Not on your lists

comp(3..611)
-----------------
DNA (609bp)
protein (203aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=44 to=65)
seg (db=Seg db_id=seg from=75 to=86)
AMDSBA1_35_2
unknown

Not on your lists

782..1243
-----------------
DNA (462bp)
protein (154aa)
seg (db=Seg db_id=seg from=4 to=17)
transmembrane_regions (db=TMHMM db_id=tmhmm from=115 to=137)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA1_35_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1246..1656)
-----------------
DNA (411bp)
protein (137aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ83_9FIRM (db=UNIREF evalue=1.7e-19 bit_score=101.3 identity=45.0 coverage=79.56204379562044)
seg (db=Seg db_id=seg from=9 to=26)
seg (db=Seg db_id=seg from=79 to=100)
AMDSBA1_35_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1974..2282
-----------------
DNA (309bp)
protein (103aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ84_9FIRM (db=UNIREF evalue=6.7e-37 bit_score=158.7 identity=78.4 coverage=92.23300970873787)
Fe-S cluster assembly (FSCA) domain-like (db=superfamily db_id=SSF117916 from=1 to=102 evalue=1.8e-34)
(db=HMMPfam db_id=PF01883 from=6 to=81 evalue=1.7e-27 interpro_id=IPR002744 interpro_description=Domain of unknown function DUF59)
AMDSBA1_35_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2303..3481
-----------------
DNA (1179bp)
protein (393aa)
ATPase-like, ParA/MinD n=2 Tax=Sulfobacillus acidophilus RepID=G8TZ85_9FIRM (db=UNIREF evalue=9.7e-129 bit_score=465.7 identity=62.0 coverage=94.65648854961832)
seg (db=Seg db_id=seg from=97 to=107)
Fe-S cluster assembly (FSCA) domain-like (db=superfamily db_id=SSF117916 from=1 to=99 evalue=2.3e-19)
AMDSBA1_35_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3507..3848)
-----------------
DNA (342bp)
protein (114aa)
Cupin 2 conserved barrel domain protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TZM6_9FIRM (db=UNIREF evalue=1.9e-45 bit_score=187.2 identity=75.2 coverage=98.24561403508771)
cupin
RmlC-like cupins (db=superfamily db_id=SSF51182 from=8 to=108 evalue=2.2e-19 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
(db=HMMPfam db_id=PF01050 from=3 to=103 evalue=1.2e-11 interpro_id=IPR001538 interpro_description=Mannose-6-phosphate isomerase, type II, C-terminal GO=Biological Process: polysaccharide metabolic process (GO:0005976), Molecular Function: nucleotidyltransferase activity (GO:0016779))
AMDSBA1_35_7
RBG_19FT_COMBO_Chloroflexi_47_15_curated, Chloroflexi, Bacteria

Not on your lists

comp(3903..4544)
-----------------
DNA (642bp)
protein (214aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
seg (db=Seg db_id=seg from=66 to=80)
seg (db=Seg db_id=seg from=5 to=20)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=23 to=211 evalue=3.9e-32)
AMDSBA1_35_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4787..5956)
-----------------
DNA (1170bp)
protein (390aa)
sqd1; UDP-sulfoquinovose synthase
NAD-dependent epimerase/dehydratase n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8M925_CALMQ (db=UNIREF evalue=1.7e-77 bit_score=295.4 identity=41.5 coverage=96.92307692307692)
NAD DEPENDENT EPIMERASE/DEHYDRATASE (db=HMMPanther db_id=PTHR10366 from=5 to=379 evalue=3.8e-146)
UDP-SULFOQUINOVOSE SYNTHASE (db=HMMPanther db_id=PTHR10366:SF22 from=5 to=379 evalue=3.8e-146)
AMDSBA1_35_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6881..7573)
-----------------
DNA (693bp)
protein (231aa)
HAD superfamily hydrolase
HAD superfamily hydrolase n=2 Tax=Sulfobacillus acidophilus RepID=G8TYY1_9FIRM (db=UNIREF evalue=1.1e-31 bit_score=142.5 identity=35.1 coverage=97.40259740259741)
seg (db=Seg db_id=seg from=96 to=107)
HAD-like (db=superfamily db_id=SSF56784 from=1 to=218 evalue=9.2e-25 interpro_id=IPR023214 interpro_description=HAD-like domain)
AMDSBA1_35_10
Bacillus badius, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7664..8587
-----------------
DNA (924bp)
protein (308aa)
czcD; cobalt-zinc-cadmium resistance protein
Cation efflux family protein n=1 Tax=Dehalococcoides ethenogenes 195 RepID=Q3ZAG2_DEHE1 (db=UNIREF evalue=6.4e-43 bit_score=180.3 identity=32.9 coverage=91.55844155844156)
seg (db=Seg db_id=seg from=1 to=11)
transmembrane_regions (db=TMHMM db_id=tmhmm from=45 to=62)
AMDSBA1_35_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8646..9071
-----------------
DNA (426bp)
protein (142aa)
DtxR family iron (metal) dependent repressor
no description (db=HMMSmart db_id=SM00529 from=24 to=123 evalue=6.0e-24 interpro_id=IPR022689 interpro_description=Iron dependent repressor, diptheria toxin type GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Molecular Function: iron ion binding (GO:0005506), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=1 to=73 evalue=8.3e-21 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
(db=HMMPfam db_id=PF01325 from=3 to=60 evalue=5.0e-20 interpro_id=IPR022687 interpro_description=Iron dependent repressor, N-terminal GO=Molecular Function: iron ion binding (GO:0005506))
AMDSBA1_35_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9712..10686
-----------------
DNA (975bp)
protein (325aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Caenorhabditis japonica RepID=H2WW71_CAEJA (db=UNIREF evalue=4.0e-19 bit_score=101.3 identity=31.5 coverage=68.3076923076923)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=152 to=166)
AMDSBA1_35_13
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(10828..11460)
-----------------
DNA (633bp)
protein (211aa)
phospholipase/carboxylesterase family protein
Phospholipase/Carboxylesterase n=1 Tax=halophilic archaeon DL31 RepID=G2MKT3_9ARCH (db=UNIREF evalue=1.2e-11 bit_score=75.9 identity=26.9 coverage=90.99526066350711)
ACYL-PROTEIN THIOESTERASE 1,2 (LYSOPHOSPHOLIPASE I,II) (db=HMMPanther db_id=PTHR10655:SF6 from=104 to=207 evalue=4.2e-24)
no description (db=Gene3D db_id=G3DSA:3.40.50.1820 from=15 to=208 evalue=1.3e-40)
AMDSBA1_35_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11535..12005)
-----------------
DNA (471bp)
protein (157aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWM8_9FIRM (db=UNIREF evalue=2.8e-47 bit_score=193.7 identity=61.9 coverage=92.35668789808918)
seg (db=Seg db_id=seg from=114 to=143)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
AMDSBA1_35_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12460..13173)
-----------------
DNA (714bp)
protein (238aa)
chemotaxis protein CheR (EC:2.1.1.80)
MCP methyltransferase, CheR-type n=2 Tax=Sulfobacillus acidophilus RepID=G8TSI8_9FIRM (db=UNIREF evalue=3.7e-46 bit_score=190.7 identity=43.8 coverage=96.63865546218487)
(db=HMMPfam db_id=PF01739 from=52 to=220 evalue=2.1e-34 interpro_id=IPR022642 interpro_description=MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=50 to=236 evalue=6.6e-34)
AMDSBA1_35_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13232..14239)
-----------------
DNA (1008bp)
protein (336aa)
response regulator receiver modulated CheB methylesterase
Chemotaxis response regulator protein-glutamate methylesterase n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZR46_THELI (db=UNIREF evalue=1.8e-43 bit_score=182.2 identity=33.2 coverage=95.53571428571429)
RECEPTOR HISTIDINE KINASE (DHKB, DHKE) (db=HMMPanther db_id=PTHR23283:SF42 from=4 to=122 evalue=6.6e-16)
Chemotaxis response regulator methylesterase, CheB type (db=HMMPIR db_id=PIRSF000876 from=2 to=335 evalue=2.3e-68 interpro_id=IPR008248 interpro_description=Signal transduction response regulator, chemotaxis, CheB GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Cellular Component: cytoplasm (GO:0005737), Biological Process: chemotaxis (GO:0006935), Molecular Function: protein-glutamate me
AMDSBA1_35_17
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14283..14636)
-----------------
DNA (354bp)
protein (118aa)
response regulator receiver protein
Uncharacterized protein n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SD80_9BACL (db=UNIREF evalue=1.8e-09 bit_score=67.8 identity=32.2 coverage=96.61016949152543)
no description (db=HMMSmart db_id=SM00448 from=1 to=112 evalue=5.4e-40 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
CheY-like (db=superfamily db_id=SSF52172 from=1 to=117 evalue=4.2e-39 interpro_id=IPR011006 interpro_description=CheY-like superfamily)
AMDSBA1_35_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14633..15217)
-----------------
DNA (585bp)
protein (195aa)
chemotaxis protein CheC
CheC-like (db=superfamily db_id=SSF103039 from=13 to=179 evalue=1.8e-21)
no description (db=Gene3D db_id=G3DSA:3.40.1550.10 from=5 to=179 evalue=7.7e-18)
Chemotaxis signal transduction protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I244_SULAT
AMDSBA1_35_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15233..16261)
-----------------
DNA (1029bp)
protein (343aa)
putative metal dependent phosphohydrolase
Metal dependent phosphohydrolase n=1 Tax=Caldicellulosiruptor hydrothermalis 108 RepID=E4Q7F5_CALH1 (db=UNIREF evalue=1.1e-14 bit_score=86.7 identity=23.4 coverage=91.54518950437318)
seg (db=Seg db_id=seg from=278 to=292)
Metal dependent phosphohydrolase {ECO:0000313|EMBL:AEJ40644.1}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" sour
AMDSBA1_35_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16242..18959)
-----------------
DNA (2718bp)
protein (906aa)
CheA signal transduction histidine kinase
CheA signal transduction histidine kinase
CheA Signal Transduction Histidine Kinases (STHK) n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YZI8_LYNSP (db=UNIREF evalue=3.3e-47 bit_score=196.1 identity=28.7 coverage=52.64900662251656)
seg (db=Seg db_id=seg from=230 to=241)
AMDSBA1_35_21
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18956..19393)
-----------------
DNA (438bp)
protein (146aa)
CheW domain-containing protein
seg (db=Seg db_id=seg from=72 to=92)
seg (db=Seg db_id=seg from=31 to=42)
(db=HMMPfam db_id=PF01584 from=2 to=122 evalue=1.1e-23 interpro_id=IPR002545 interpro_description=CheW-like protein GO=Molecular Function: signal transducer activity (GO:0004871), Cellular Component: intracellular (GO:0005622), Biological Process: chemotaxis (GO:0006935), Biological Process: signal transduction (GO:0007165))
AMDSBA1_35_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19406..21406)
-----------------
DNA (2001bp)
protein (667aa)
methyl-accepting chemotaxis sensory transducer
coiled-coil (db=Coil db_id=coil from=643 to=664 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=192 to=214)
seg (db=Seg db_id=seg from=334 to=345)
AMDSBA1_35_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21577..21801)
-----------------
DNA (225bp)
protein (75aa)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TXY0_9FIRM (db=UNIREF evalue=1.9e-12 bit_score=77.0 identity=54.1 coverage=96.0)
seg (db=Seg db_id=seg from=2 to=13)
(db=HMMPfam db_id=PF07561 from=6 to=71 evalue=4.7e-13 interpro_id=IPR011437 interpro_description=Domain of unknown function DUF1540)
hypothetical protein
AMDSBA1_35_24
Sporomusa ovata, Sporomusa, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(21965..23284)
-----------------
DNA (1320bp)
protein (440aa)
cytosol aminopeptidase (LAP) (Leucyl aminopeptidase) PepA (EC:3.4.11.1)
Probable cytosol aminopeptidase n=2 Tax=Sulfobacillus acidophilus RepID=F8I5Z0_SULAT (db=UNIREF evalue=4.1e-59 bit_score=234.6 identity=35.8 coverage=88.4090909090909)
seg (db=Seg db_id=seg from=233 to=249)
CYTOSOL_AP (db=PatternScan db_id=PS00631 from=291 to=298 evalue=0.0 interpro_id=IPR000819 interpro_description=Peptidase M17, leucyl aminopeptidase, C-terminal GO=Molecular Function: aminopeptidase activity (GO:0004177), Cellular Component: intracellular (GO:0005622), Biological Process: proteolysis (GO:0006508))
AMDSBA1_35_25
unknown

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comp(23438..23905)
-----------------
DNA (468bp)
protein (156aa)
seg (db=Seg db_id=seg from=91 to=109)
AMDSBA1_35_26
unknown

Not on your lists

25248..25616
-----------------
DNA (369bp)
protein (123aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=28)
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=70)
transmembrane_regions (db=TMHMM db_id=tmhmm from=77 to=99)
seg (db=Seg db_id=seg from=55 to=70)
AMDSBA1_35_27
unknown

Not on your lists

comp(25613..26308)
-----------------
DNA (696bp)
protein (232aa)
25613..26308 - ( gc_cont=0.527)
AMDSBA1_35_28
GWF2_Planctomycetes_50_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(26726..27124)
-----------------
DNA (399bp)
protein (133aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Methanocaldococcus infernus ME RepID=D5VSD1_METIM (db=UNIREF evalue=1.1e-28 bit_score=131.7 identity=46.8 coverage=93.23308270676691)
YjbQ-like (db=superfamily db_id=SSF111038 from=1 to=132 evalue=1.5e-41 interpro_id=IPR001602 interpro_description=Uncharacterised protein family UPF0047)
TIGR00149_YbjQ: secondary thiamine-pho (db=HMMTigr db_id=TIGR00149 from=2 to=132 evalue=2.5e-41 interpro_id=IPR001602 interpro_description=Uncharacterised protein family UPF0047)
AMDSBA1_35_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27426..28670
-----------------
DNA (1245bp)
protein (415aa)
major facilitator superfamily protein
major facilitator superfamily protein
Putative uncharacterized protein n=1 Tax=Sulfolobus tokodaii str. 7 RepID=Q96XI6_SULTO (db=UNIREF evalue=1.5e-18 bit_score=99.8 identity=24.9 coverage=86.02409638554217)
seg (db=Seg db_id=seg from=361 to=374)
AMDSBA1_35_30
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28693..29259)
-----------------
DNA (567bp)
protein (189aa)
plasmid pRiA4b ORF-3 family protein
Plasmid pRiA4b ORF-3 family protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SM50_9DELT (db=UNIREF evalue=4.8e-25 bit_score=120.2 identity=39.1 coverage=85.18518518518519)
(db=HMMPfam db_id=PF07929 from=7 to=179 evalue=5.7e-51 interpro_id=IPR012912 interpro_description=Plasmid pRiA4b, Orf3)
Plasmid pRiA4b ORF-3 family protein {ECO:0000313|EMBL:ADG07572.1}; TaxID=562970 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Kyrpidia.;" source="Kyrpidia tusciae (strain DS
Displaying items 1-30 of 40 in total

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